KEGG   Salvia hispanica (chia): 125194010
Entry
125194010         CDS       T09851                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
shis  Salvia hispanica (chia)
Pathway
shis03030  DNA replication
shis03410  Base excision repair
shis03420  Nucleotide excision repair
shis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125194010
   03410 Base excision repair
    125194010
   03420 Nucleotide excision repair
    125194010
   03430 Mismatch repair
    125194010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shis03032]
    125194010
   03400 DNA repair and recombination proteins [BR:shis03400]
    125194010
Enzymes [BR:shis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     125194010
    6.5.1.6  DNA ligase (ATP or NAD+)
     125194010
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     125194010
DNA replication proteins [BR:shis03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    125194010
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     125194010
DNA repair and recombination proteins [BR:shis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     125194010
   NER (nucleotide excision repair)
    Other NER factors
     125194010
   MMR (mismatch excision repair)
    Other MMR factors
     125194010
Motif
Pfam: DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N
Other DBs
NCBI-GeneID: 125194010
NCBI-ProteinID: XP_047947957
LinkDB
Position
6:44882941..44886570
AA seq 608 aa
MASPSIIEELKKHSSEFSVSDVVKWEFGNVIPFDFLANSLVALSEVDEWDSCLTNILRAV
IESSPTDLLAVICLLARKVFDDNGSYRISASREVVVRAIANSSQKTKQVIKRNLKENGND
LALVAELNRPVLLRPRRPLTIGHVFLKLEVYAKDSGTEECNNYKMYILLELFNASSTFEA
RTLVQFLQPPWDPIPLTNLVEALARAAVYADKNIPPQDISTHLVKAVRVSKQIYKLRPRV
SLFVDAIHSTGDYKDFPELIGFGPGIPVKLKQPVAVKDDLLEIYTNFNEVELVCESYIPG
AVCAQIHGDGRRIDIFVNDDCVTNMYSDVGEVISRLKKPSIESFILECKMVVCEDSNCNV
SVYVTDLLYLNGMSRLMDQFESRIQLFRSSFDTKTGSFELVNFKESKDLETIPSFLKDAN
SSLVLKRWISDSFYQPSKQPRDWFILEKDLFVRIQYDLNLIPIAAIREEDSGDAYSSFLL
ASYDDIKEEYEAICYIGSTLSEAEIEELSSGLCSNLINEPKASYKYSSETSSLDVWFEPS
QVWEVKASLLATSSDFRACFGVVEPDKGICLCFTSFVGVKSDSSKVSTSNMVADLYKSQK
HINTEEEA
NT seq 1827 nt   +upstreamnt  +downstreamnt
atggcttcgccctcaattattgaggagcttaagaaacactcttcagagttttcagtgtct
gatgtagttaaatgggaatttggtaatgttatcccatttgattttctagcgaatagtttg
gtagctctctcagaggttgatgaatgggatagttgcttaaccaatattctgagggctgtc
atagagtcatcacccactgatctgcttgctgtgatatgcctactcgctaggaaggttttc
gacgacaatggttcctatcgtattagtgcttctagggaggttgttgtacgtgcgatagct
aattcatctcaaaagaccaagcaagttataaaacgaaacctaaaagagaatggtaatgat
ttagctttagttgctgaattgaataggccggtgctgctaagacctcgtcgacccttgacc
attgggcatgtttttcttaagctggaagtgtatgctaaggatagtggaacggaagaatgc
aataactacaagatgtatattttgcttgagttattcaatgcttcatctacatttgaagct
agaactttggttcagtttcttcagccaccatgggatcccatccctttgacaaatttagtg
gaagctctggcccgtgctgctgtttatgctgacaagaacatccctccacaagatatttct
acacatcttgtaaaagctgtcagagttagtaagcagatttacaaattgcgacctagagtt
agtttgtttgtggatgcaattcattctactggagattacaaggactttccagaacttatt
gggtttggccccgggattcctgtcaagctcaagcagcctgttgctgtgaaagatgatttg
ctggaaatttatacaaattttaatgaggtagagttggtatgtgagtcgtacatcccaggt
gccgtatgcgctcagattcatggggatgggagacgcattgacatatttgtaaacgatgat
tgtgttacaaatatgtattccgatgttggtgaagttatctctagactgaagaaaccatct
atagaatctttcatattagaatgtaaaatggtcgtttgtgaagactctaactgtaatgtt
agtgtatatgtcactgaccttctctaccttaatgggatgtctcgtctgatggatcaattt
gaatcaagaattcagctttttcgcagttcctttgacacaaagacaggttcatttgagctt
gttaactttaaagaatcaaaggatcttgagactataccatcctttttaaaggatgcgaat
tcaagcttggtattgaagagatggatttcagattctttttatcagccatcaaagcaacca
cgagattggtttattttggagaaagatttgttcgttaggattcagtatgacctaaatctg
atccctattgctgccattcgagaagaagacagtggagatgcttattcatcttttcttttg
gcgtcttatgatgacattaaagaagaatatgaggctatttgttatataggttctactttg
tccgaggccgagattgaagaactttcatctggtctttgctcgaaccttattaatgagcct
aaggcatcttacaagtattcaagtgagactagtagtcttgatgtgtggtttgaaccctct
caggtttgggaggtcaaagcatcgctacttgctactagtagtgatttccgtgcttgcttt
ggtgttgtagagcctgataaggggatttgtctatgtttcactagtttcgttggtgtcaaa
agtgactcaagcaaggtttcaacatcaaatatggtggctgatttatacaagtcacagaag
catatcaacactgaagaggaagcttga

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