Salvia hispanica (chia): 125213535
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Entry
125213535 CDS
T09851
Name
(RefSeq) nuclear-pore anchor-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125213535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125213535
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125213535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Fez1
HrpB7
Motif
Other DBs
NCBI-GeneID:
125213535
NCBI-ProteinID:
XP_047970093
LinkDB
All DBs
Position
3:22466839..22485573
Genome browser
AA seq
2055 aa
AA seq
DB search
MPLFVSDEEFRRCSHDAAILTEKADDFIRGLFNQIETVKAEADAASITLEQTCALNEQKY
VSLSAEYSSLLLHNSEINALLEKRDAEIAELKVEKQRFLLQSIEKDGELERLMREASELH
RSKRQLLELVEQRDLEINERNATIKSYLDKILDLTENAASKDARIRDLESELGRFHATSD
RILQEKELLERHNSWLNEELTTKVNNLIQVRKEYGECEADVSGKLADLELKLKESANSLK
FHKDRVRELEEKLASVERELLSTKDAAAGAEQRSLAEISTVTKLVDLYKESSEEWSKKAG
ELEGVIKALETHLNQVETEYKDKLDKELSARKEVEKESTDLKYQLESCQTELEKLKRGNE
LQHLPLSSFTTGLLTNSVDTDEMVLDDRAIIPSIPAGVSGTALAASLLRDGWSLGKIYAK
YQEAVDALRHEQLGRKQSQAILERVLYEIEEKAGIIMDERDEHERLVEAYSALDQKLQQT
LSGHSTLEITIQDLKAKLKRQERDYAIAQKEIVELQQQVAVLLKECRDVQLRCGSVTPYQ
DDELISDFSVPAGSESRAENIILDHLLTFKDINGLVEQNVQLRSLVHNLSDQIADNGAEL
KEKYGKELQMHMEETASKVNVVLLRAEEQESMIESLHTSVAMYKKLYEEEQKLRAYPIHL
LETVPERGSREIIPIKESIHETSRKHEHTLERLRSLEEDLAKSKNDIISLRSDRDKLQMV
ATFAEEKLARFLKEFEQQREEHNGIRARNVEFSQIIVDYQRKFRESADSLDAANELSRKF
TMEVSILKQEKEMLQNSEKRASDEVCSLSERVHWLQATLDTMQSAEEVREEARGVERRKQ
EDYVNKIEREWAEAKRELQEQRDLVRNLSLEHDSSLKDARKQVDELNKELATAVRSVANA
ESRAAIAEARYSDLGKIVESTRTKDSDGVDSQLSSSSTEKMLEKFRDEIQKLREEAEASK
NHMLQYKSIAQVNEEALKQLEVAHENFRKEADELKRSLENEVHLLREHVSELESECKLKT
EEAISANSGKEEALAGALFEIASMKDDYSVKMSQIVVMESQITALKEELESEHKKWRTAQ
DNYERQVILQSETIQELTKTSQALDSAQKGAFELRKVVDVLKTENAELKSKWETERLAIE
VYRNEADKTYAEINELNKILHCRLEALHIKLAEKEKGIASGSNSKNVGDDDGLQNVLSYL
RRSKEIAETEISLLKQEKHRLQSQLESALKSAESVQTLLQTEREKSRASLYTQDEFQSLQ
LQVRELTLLRESNVQLREENRHNFEECQKLRETFQNAKIAIENLEKLLKNRDRELEAYRK
EIEIFKAEKTHHENRIDELVQKCKEIDVNEYNQSKEAFQQIQMSLGEKDSQLEEVKKHLS
EKQETVSILERDLARSKTEVSERENKINEVSQTAASLKSESDKFKRINYHFKRKVDNLEK
EKEEMSKEVQSLSKQLEEARQALSKQLEEAKLVKRTTVDSGGENMLREKAKDTRIQTLER
ILEKQRDEQKKEKEDHLKEKDHLKEKEKFQNIRKIISDSRGNVNQEKTKLLDDLTKHKLA
LKALQDEVEKIKNPGSSQSENASGVQHFSSNILDDFASAYFQAVDNFEQLAQSACTGPDS
TTTDAPPLDNATSGAVPPGQAVPSLQTPEPPAASVPAARADVKERRPALTKATLKMGRKL
VRPNITKPKDPQGDVEMTEGDESNTGLPSHSTESQGTETAPTTASARKRMQEEMLTSEET
ASDVPAPLPKKPKAPDSLQVASDELVAAPTKLPEAVISVESSDDMGNLQQSEEVVEKDEL
DTGGDQTDEPLADEEFSETVDATDEDLEKPTDSIISDDQLRDQTEQDIQRIVVESGGEKE
EGEQLVRDFTDNDGDSSAINETGGPGNEEFQGEQSTDPEKSPSIEPLGMEDEEINPSQTL
EEEKIGDLNETIAETDSSDKLNHGADSSAETNRAPGSSNPPSEEASTSTTVSTVDAGSSD
QAGSTPPQDTGGTPVSPLNSGSTTINLQERAKQRAQMRQAGMGGVTSSPARGRGRTIRGR
SVRGGRTGRGRQSPG
NT seq
6168 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttttcgtatcggacgaagaattccggcggtgctcgcacgatgcggcgattttg
acggagaaggcggacgatttcatccgtggactattcaatcaaatagagacggtgaaggcg
gaggccgacgccgcctccattactctcgagcagacgtgcgctctcaacgaacagaaatat
gtctccctttccgcggagtactcctccctcctgctgcacaactccgagataaatgctttg
cttgaaaagcgcgatgctgaaattgcggagcttaaagtcgagaagcagcgatttctcctt
cagtctattgaaaaagatggggagctagagaggctgatgagggaagcatcagagcttcat
cgatcgaagaggcaactgttggagttggtggaacaaagggacttggaaatcaacgagaga
aatgccacaataaagagttatcttgataaaattcttgatttgactgaaaatgctgcatca
aaagatgcacggataagagacctagaatctgaattggggcgatttcatgcaacatcagac
cgtattttacaggagaaggagcttcttgagaggcataattcatggcttaatgaggagctg
acgactaaggttaataatctgatccaggttcggaaagaatatggagaatgtgaagctgat
gtttctggtaaacttgcagatcttgagctaaaattgaaggagagtgccaattctttgaaa
tttcacaaagacagagtgagggagttggaggagaaactggcatcggtagaaagagagttg
ttgtcaactaaagatgctgctgcaggcgcagagcaacgttccttggctgaaatttcaaca
gtaaccaaacttgttgacttgtataaagaaagttcggaggaatggtccaagaaggcagga
gaacttgagggagtcatcaaggctcttgaaactcacttaaatcaagttgaaactgaatat
aaagataagcttgacaaagaattgtctgcaaggaaggaagtggaaaaggaatctactgat
ttgaaatatcagctagaaagttgccaaacagaattggagaagttaaaaagaggaaatgag
ctgcaacaccttcctctgagtagttttacaactggcttattgacaaattcagttgatact
gatgaaatggttttggatgatcgagcaattattcctagcattcctgccggagtttctgga
actgcattggcagcttcacttcttagggatggatggagtctggggaaaatatatgccaaa
tatcaagaggctgttgacgctctacggcatgaacagttggggagaaagcaatcccaagct
atattggagcgtgtactttatgaaatagaagaaaaagctggaataattatggatgaaaga
gatgaacatgaaagacttgtcgaggcctactctgctttagatcagaaactgcagcagaca
ctatctggacattctactctggagattaccattcaggatctcaaggctaagttaaagagg
caggagcgtgactacgcgattgctcagaaggagatcgttgagctccagcaacaggtggct
gtactgttaaaagagtgtcgggatgttcagttgcgttgtggatcagttaccccttatcaa
gatgatgagctcattagtgatttttctgtgccagcgggttctgaatctagagctgagaac
atcatattagaccacctgttaaccttcaaagacatcaatggattagttgaacagaatgtc
cagctgcgcagtcttgttcacaacttatctgatcagattgcagataatggagcagagttg
aaggaaaaatatgggaaggagcttcagatgcatatggaagagactgcgtctaaagttaat
gtggtattgttaagggcagaggaacaggagagcatgattgagtcacttcatacctctgtg
gccatgtacaagaagctgtatgaagaggagcaaaaactccgtgcttatcctattcatctg
cttgaaacagttccagagcgagggagcagggagattatacctataaaagaaagtatccat
gagacatcaagaaagcatgaacatacgttagagcgtctgagaagtctggaagaagatttg
gcaaagtccaagaatgatatcatatcattgcgatctgatcgtgataaattgcaaatggta
gcaacttttgcagaagaaaaacttgccaggtttctgaaggagtttgagcaacagagggaa
gagcataatggaattagagcgagaaatgttgagttctctcagataatagttgactaccaa
aggaaattccgcgaaagtgctgactcattggatgctgccaatgaactatctaggaagttt
acaatggaggtatcaattttgaagcaagaaaaagaaatgcttcagaactctgagaaaaga
gcttctgatgaagtttgtagtttgagtgagagggttcattggcttcaggctactctggac
accatgcagagtgctgaggaagtgcgggaggaggctagaggtgttgagaggagaaaacaa
gaagattatgtaaacaaaattgagagagaatgggccgaggcaaaaagagaacttcaggaa
caacgagatcttgttcggaacctttctcttgagcatgatagtagtttaaaggatgcgcga
aaacaagttgatgagttaaataaagaattagctactgctgtgcgatccgtggcaaatgct
gaatctagagcagcaattgcagaggctcgttattctgatctggggaagattgtggaatct
acaaggacaaaggattccgatggtgttgatagtcaactatcttcttcttctactgaaaag
atgttggagaaattccgggatgaaattcagaaattaagggaggaagctgaggcaagcaaa
aatcacatgcttcagtacaagagtattgctcaagtcaatgaagaagccctcaaacaattg
gaggtggcccatgagaattttaggaaagaggctgatgaattaaagagatctctagagaat
gaggttcatttgctcagggagcatgttagtgaacttgagagtgaatgtaaactgaaaact
gaagaggctatttctgcaaattctgggaaagaagaggctcttgctggtgctttgttcgag
attgccagtatgaaggatgactattctgttaaaatgtcacagattgtggtaatggaatcc
caaatcactgcattgaaagaagagttggagtcagaacataagaaatggcgaactgctcaa
gacaactatgagagacaggttattctacagtcagaaaccattcaagagctgacgaaaact
tcacaagccttggattctgcacaaaaaggggcatttgagctccgtaaagtggtggatgtg
ctcaaaacagaaaatgcggagctgaagtctaagtgggagacggaaaggttagctattgaa
gtatacaggaatgaagcggataagacgtatgctgaaataaatgaactgaacaagattttg
cactgtcgacttgaagccttgcacattaagttggctgagaaggagaaaggaatagcttct
ggaagcaattccaagaacgttggagatgatgatgggttgcaaaatgttttgagctatctc
cgacggtcaaaggaaatagctgaaacagaaatctcattattgaaacaagaaaagcatcgt
ttgcaatctcagttagagagcgctttgaagtcagctgagtctgtacagacattgcttcaa
acagaacgtgagaaatcacgggcatcattgtatacacaggacgaattccaatctcttcaa
ttacaggtcagagagctaactttattgcgtgaaagcaatgtgcaactcagagaggaaaac
cggcataattttgaagaatgccagaaacttcgtgaaacatttcagaatgctaagattgca
attgagaatttggagaagcttcttaaaaacagagacagagagctggaagcgtacagaaaa
gaaattgaaatcttcaaggcagaaaaaacacatcatgaaaacagaatagatgagttggta
cagaagtgcaaggaaattgatgtcaatgaatataatcagtcgaaggaagctttccagcag
attcaaatgagtttaggggaaaaggatagtcagttggaggaggttaagaaacatttatca
gaaaagcaggaaacagtatcaattctagagcgagacctagctagaagcaaaactgaagtg
agtgaacgagagaacaagattaatgaagtgtcacaaactgcagcttctctgaaatctgaa
tctgataaatttaagcggataaattatcactttaaaaggaaggttgataatcttgaaaag
gagaaagaagagatgagcaaagaggtccagtctttgtccaaacaattagaggaagctaga
caggccttgtcgaaacaactggaggaggctaaacttgtaaaacgaaccactgttgattcc
ggaggagaaaatatgctgagggaaaaggcgaaagataccaggattcaaacactagaaaga
atactggagaagcaaagagatgaacagaagaaagaaaaagaagaccatcttaaagaaaaa
gatcatcttaaagaaaaagaaaaatttcaaaacatccggaaaataatatctgactctcgt
gggaatgtcaatcaagaaaagacgaaactcttagatgatcttacaaagcataaattagct
ttgaaagctcttcaagatgaagtggaaaaaataaagaaccccggaagcagtcaatcagag
aatgcgtccggggtccaacatttctctagtaatatattggatgattttgcttccgcctat
ttccaggctgtagataattttgaacaattagcacagtctgcttgtactggtcctgattct
accacgaccgatgctccacctcttgataatgcaacatctggtgcagttccccctggtcaa
gctgtaccatcactccaaacccctgaacctccggctgccagtgttcctgcagctagagct
gacgtgaaagagagaagacctgctttgacaaaggcaaccctgaaaatgggaaggaagctg
gtgcgtcctaatattacaaagcccaaagatcctcaaggggatgtggagatgacagaagga
gacgaatctaatactggattaccatcccatagtacagaaagtcaaggaactgaaactgct
cccacaacagcatctgcacgtaaacgcatgcaagaggagatgctcacttcagaagaaact
gcctctgatgtcccagcacctttacctaaaaagccaaaagctccagatagcctacaggtg
gcaagtgatgaactagttgctgctcctacaaagcttcctgaagctgttatctctgtagaa
tcatcagatgatatgggaaaccttcagcaaagtgaggaagttgttgagaaggatgagctt
gacactggaggagatcaaactgatgagccattagcagatgaagagttcagtgaaacagtc
gatgccacagatgaagacttggagaaaccaactgacagtataatatctgatgatcaactg
agagatcaaaccgaacaagatattcagcgcatagttgtagagtcaggtggtgagaaagaa
gagggggagcagctggttagagattttactgacaatgatggtgatagcagtgcaattaat
gagacaggagggccaggaaatgaagaatttcaaggcgaacaatcaactgatcctgagaaa
tcacctagtattgaaccattgggcatggaagatgaggagattaatccatcccagacactt
gaggaagagaagataggtgacttaaatgagaccatagctgaaactgacagttctgataag
cttaaccatggtgcagattcttccgcagaaaccaacagggcacctggttcgtccaatcct
ccatctgaggaagcttcaactagcactactgtttctactgttgatgctggatcttccgat
caagctggatcgactcccccacaggacacaggtggaacacccgtgtcgcctttgaacagt
ggttcaacaaccattaatctacaggagagagcaaaacagcgagcacaaatgagacaggct
ggcatgggaggggttacttcttcaccagccagaggtcgtggccgaacaatccgtggccgt
agtgtaagaggtggccgcactggacgtgggcggcaatcacccggttaa
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integrated database retrieval system
