Sarcophilus harrisii (Tasmanian devil): 100922827
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Entry
100922827 CDS
T02286
Symbol
GRIN2C
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C isoform X1
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04020
Calcium signaling pathway
shr04024
cAMP signaling pathway
shr04080
Neuroactive ligand-receptor interaction
shr04713
Circadian entrainment
shr04720
Long-term potentiation
shr04724
Glutamatergic synapse
shr05010
Alzheimer disease
shr05014
Amyotrophic lateral sclerosis
shr05017
Spinocerebellar ataxia
shr05020
Prion disease
shr05022
Pathways of neurodegeneration - multiple diseases
shr05030
Cocaine addiction
shr05031
Amphetamine addiction
shr05033
Nicotine addiction
shr05034
Alcoholism
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
100922827 (GRIN2C)
04024 cAMP signaling pathway
100922827 (GRIN2C)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
100922827 (GRIN2C)
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
100922827 (GRIN2C)
04720 Long-term potentiation
100922827 (GRIN2C)
09159 Environmental adaptation
04713 Circadian entrainment
100922827 (GRIN2C)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
100922827 (GRIN2C)
05014 Amyotrophic lateral sclerosis
100922827 (GRIN2C)
05017 Spinocerebellar ataxia
100922827 (GRIN2C)
05020 Prion disease
100922827 (GRIN2C)
05022 Pathways of neurodegeneration - multiple diseases
100922827 (GRIN2C)
09165 Substance dependence
05030 Cocaine addiction
100922827 (GRIN2C)
05031 Amphetamine addiction
100922827 (GRIN2C)
05033 Nicotine addiction
100922827 (GRIN2C)
05034 Alcoholism
100922827 (GRIN2C)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100922827 (GRIN2C)
Ion channels [BR:
shr04040
]
Ligand-gated channels
Glutamate (ionotropic)
100922827 (GRIN2C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
NMDAR2_C
Motif
Other DBs
NCBI-GeneID:
100922827
NCBI-ProteinID:
XP_031821619
Ensembl:
ENSSHAG00000018815
LinkDB
All DBs
Position
4:complement(320091766..320121928)
Genome browser
AA seq
1314 aa
AA seq
DB search
MGQGQRRPRQEDTRRTLERARSCPVRGGRAASWRTSPVDMGRVLGLALLLTTLLGTWAGV
GPGRGKQVVTVAVVFASSAPPLQAQAQTLARARLTPQNFLDLPLEIQPITVVINDTNPST
LLTQLCGLLGSARVHGIVFEDNVGTEAVAQILDFISSQTHVPIISISGGSAVVLTPKEPG
SSFLQLGVSIEQQIQVIFKVLEEYDWSSFAVITSFHPGYAIFLEGIRSFTEASYLGWELQ
DILTLELSPGSPSSRVQRLLRQLDAQVLVAYCSREEAEYLFTVAEEEGLVGPGYVWVVPS
LALGSTDTPPSVFPVGLISVVTESWRLSLRQKVRDGVAIVALGAHGYLRYHGDLPAPARD
CYAPAEPTSPAGEAFYGHLLNVTWEQRDFSFSAGGYLVRPTMVVISLNRHRLWEMVGRWE
QGIIHMKYPVWPRYGTYLQPVVDNRHLTVATLEERPFVIVESPDSSTGGCIPNTVPCRKQ
SNRTDRFGSSDGPGDSYTKLCCKGFCIDILKKLAKGVKFSYDLYLVTNGKHGKKVRGIWN
GMIGEVYYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYS
PAVWVMMFVMCLTVVAITVFMFEYFSPVSYNQNLTSAKKTGGPSFTIGKSVWLLWALVFN
NSVPIENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQRPQ
EQYPPFRFGTVPNGSTERNIRSNYRDMHSHMVKFNQRSVEDALTSLKMGKLDAFIYDAAV
LNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRAIDLALLQFLGDGETQKLETV
WLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLALLVFAWEHLVFWKLRHSVPHTPR
LDFLLAFSRGIYSCFSGVQSLSSPTRAPSPDLTAGSAQANVLKMLQAAKKMVNTAGVGSS
LDCATRTIESWGSRCEAPPSTFSLRNPQLLLQSGALSLPGRAARAQNAWPLGPRGGPRDP
GHKGQADAGDLVVRKVLASAPLPLPDIPPTPGCPGKGSPRRMGPGRRSRLFSGSGGCQPP
ECPFPSAPCTHGSLLWADRTGRPFLPLFPEPSEPEDLPLLGPDQLARREALLRAAWSHRH
CLRQGSWPRSMAEYCSVPGPSPPAASMPALCPSQAAQARSPARSGADARGAWKRLAQAQS
LRLPSYREACQEAAPSGAPSALQRQNYLDACAPLPLYWGSVCPHSPACASQDPWISETWG
PRKHRGRTLGGLGASYRDSGGWGELKEAGPAACRTHSPLGPCSWRRVSSLESEV
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggggcaaggacagcggagacctagacaggaggatacccggagaactctggagcgcgcg
cggtcctgccctgttcgaggaggaagggcagcgagctggaggacctctccagtggacatg
ggtagagtcttgggactggccctcctgctgaccaccctcctaggcacctgggcaggggtg
gggcctggccgggggaaacaagtggtgacagtagctgtggtgtttgccagctcagcaccc
ccattgcaggctcaggctcagaccctggcccgggcccgcctcaccccccagaacttcctg
gacctgcccctggagatccagccaatcactgtggtgatcaatgacaccaaccccagcacc
cttctcactcagctctgtgggctcctgggctctgcccgtgtccatggcatagtctttgag
gacaacgtgggcactgaggctgtggcgcagattcttgacttcatctcctcccagacccac
gtgcccatcatcagcatcagtggaggctcggctgtggtccttactccaaaggagcctggc
tcatccttcctgcagctgggggtgtccattgagcagcagatccaggtgatcttcaaggtc
ttggaggagtatgactggagctccttcgcggtcatcaccagcttccacccaggctacgcc
atcttcctggagggcatccgctcattcacggaggccagctacctgggctgggagctacag
gacatcctcacgctggagctgagccccggcagccccagctcccgcgtgcagcgcctgctg
cgccagctcgacgcccaggtgctggtggcgtactgctctcgggaggaggccgagtacctg
ttcaccgtggccgaggaggaagggctggtgggcccgggctacgtgtgggtggtccctagc
ctggcactgggcagcactgacacgccgccctccgtcttccccgtgggcctcatcagcgtg
gtgacagagagctggcgcctcagcctgcggcagaaggtccgggatggggtggccatcgtg
gccctgggggcccacggctacctgcgctaccacggagacctgccggcgcctgctcgggac
tgctacgccccggccgaacccaccagccctgctggagaagccttctacgggcacctgctg
aatgtgacctgggagcagcgagatttctccttcagtgctggcgggtacttggtgcggccc
accatggtggtgatctcactcaaccggcataggctctgggagatggtagggcgctgggag
cagggcatcattcacatgaagtaccctgtgtggcccaggtatggcacctacctgcagcca
gtggtggacaaccggcacctgacggtggccactctggaggagcggcccttcgtcatcgtg
gagagtcctgactctagtacaggtggatgcattcccaacactgtgccctgccggaaacag
agcaaccgcaccgacaggtttggcagcagcgatggccctggggactcctacaccaaactg
tgttgcaagggcttttgcatcgacatcctgaagaaactggccaagggggtcaagttctcc
tatgacctgtacctggtgaccaatggcaaacatggcaagaaggtgcggggcatctggaac
ggcatgatcggtgaggtgtactacaagcgggcagacatggccatcggctccctgaccatc
aacgaggagcgctcggagattgttgacttctccgtgcccttcgtggagacgggcatcagc
gtcatggtggcccggagcaatggcaccgtctcgccctctgccttcctggagccctacagc
ccagccgtgtgggtcatgatgtttgtcatgtgtctcactgtggtggccatcaccgtcttc
atgttcgagtacttcagcccagtcagttacaaccagaacctcaccagcgccaagaagact
gggggtccctccttcactattggcaaatctgtctggctgctgtgggctttggtcttcaac
aattctgtgcccattgagaacccccggggcactaccagcaaaatcatggtgcttgtctgg
gccttctttgccgtcatcttcctggccagctacacagccaatctggcagcctttatgatt
caggagcagtacatcgacaccgtgtctggcctcagcgacaagaagtttcagcggccccag
gagcagtaccctccgttccgctttggcacagtgcccaatggcagcacagagcgaaacatc
cggagcaactaccgggacatgcacagccacatggtcaagtttaaccagcgctcagtggag
gatgcactcaccagcctcaagatggggaagctggacgcctttatctacgatgctgctgtt
ctcaactatatggcgggcaaggatgagggctgcaagctggtgaccattgggtcgggcaag
gtctttgccaccacgggctacggcatcgctttgcagaaggactcccgctggaaacgggcc
attgatctggcgctcctgcagttcctgggggacggggagacccaaaagctggaaacagtg
tggctgtcggggatctgccagaatgagaagaacgaggtgatgagcagcaagctggacatc
gacaacatggcgggcgtcttctatatgctcctggtggccatggggctggccctgcttgtc
tttgcctgggagcacctggtcttttggaagctccggcattctgtgcctcacaccccgagg
ctggatttcctgctggcctttagcagggggatctacagctgcttcagcggggtacagagc
ctcagcagccccaccagggctcccagcccagacttgacagccggttccgcccaggccaat
gtgctgaagatgctccaagcggcaaagaaaatggtgaatacagcgggcgtggggagttcc
ctggactgcgccacccgcaccatcgagagctggggcagtcgctgcgaggctccaccttcc
accttctctcttcgaaaccctcaactgctgttgcaaagcggggcgctgagcctgccaggc
agggccgcccgagcccagaacgcgtggcccctgggcccccggggagggccccgagaccct
ggccacaaaggccaggctgacgcgggggacctggtggttcggaaggtcctcgcttcagcc
cccctgcccctgcccgacatcccccccacgcctgggtgtcctggcaagggctccccgcga
cggatgggaccaggacgcaggagcaggctgttctcaggctcaggtgggtgccagcctcct
gagtgcccgttcccgtctgctccctgcacccatggatccttgctctgggcagaccggacg
ggccgcccctttctcccgcttttcccagagccctccgaacccgaggacctgcctctgctg
gggcccgaccagctggctcgacgggaggctctactgcgtgcggcctggtcccacaggcac
tgcctgcgccagggctcctggccaaggtcgatggccgagtactgctccgtgcccggccca
agccctccggcagcctcgatgcctgccctgtgcccttcccaggctgctcaggcgaggagc
cctgcacgttctggcgcggacgcccggggggcctggaagcgcttggcccaggcccagtcc
cttcggctgccctcctacagggaggcatgccaggaagcagcgccttctggggcccccagc
gcgctgcagagacagaactatcttgacgcctgcgcccctctgccgctctactgggggtct
gtgtgtccacattccccggcctgtgccagccaggacccctggatctcagagacctgggga
cctcgaaagcacaggggcaggactttgggggggctgggcgccagctacagggatagtggg
ggctggggggagctgaaggaggccgggcctgcagcctgcaggacacacagccccctgggg
ccctgcagctggaggcgagtctccagcctagaatcagaggtgtga
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integrated database retrieval system
