Stereum hirsutum: STEHIDRAFT_46012
Help
Entry
STEHIDRAFT_46012 CDS
T03127
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
shs
Stereum hirsutum
Pathway
shs03020
RNA polymerase
shs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
STEHIDRAFT_46012
09124 Replication and repair
03420 Nucleotide excision repair
STEHIDRAFT_46012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shs03021
]
STEHIDRAFT_46012
03400 DNA repair and recombination proteins [BR:
shs03400
]
STEHIDRAFT_46012
Enzymes [BR:
shs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
STEHIDRAFT_46012
Transcription machinery [BR:
shs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
STEHIDRAFT_46012
DNA repair and recombination proteins [BR:
shs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
STEHIDRAFT_46012
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
ADD_DNMT3
Motif
Other DBs
NCBI-GeneID:
18804726
NCBI-ProteinID:
XP_007297953
JGI:
Stehi1_46012
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
MLGHQFTHSAAPLRKVKEVQFGILSPEEIKAYSVAKVEHPEVMDEATHKPKMGGLMDPRM
GTIDRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADIS
DPHFADKIRHVRDPKTRMAVVWGHCKGKMICEADEPKEDGEDGAAQGPAKPGHGGCGHPQ
PQIRKEGLKLFLQYKKSKDDDEDMKSLQPDKRLFTASEVYTTLKKISESDLHLLGLSDEY
ARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAH
VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF
SARTVITGDPNLELDEVGVPKSIAMTLTYPERVTPYNIEYLQELVRNGPTTYPGARYVVR
DTNERIDLRYNKRADTFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTF
RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTL
CGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPIPAIIKPKPMWSGKQILSMAIPRGINI
HRSPDPKSANPVFDDGMLIENGEIIFGIVDKKTVGASQGGLVHVVFREKGPEATRTLFTG
LQTVVNYWLFHNGFSIGIGDTIADRKTMAYITQQITERKQNVQQIIEDATHDRLKSMPGM
TIRESFESKVERELNLARDDSGKYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQ
SVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTA
VKTAETGYIQRRLVKALEDVMVNYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIDTFAL
NHQDFEHNYRVDVTDPAGGFLPGVLQVGIDDSSPELQAKLDEEYDQLVEDRRTLREFVFA
NADANTPHYLPVNLHRIVQNATQIFHIDKRKPSDLDPVYIVDAVRDLANRLVIVRGDDSL
SREAQDNATLNFRMHLRATFACRRVLERHHLTREAFDWVLGEVETKFNMSVVNPGEMCGT
LAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVYLQPEFAA
QSSQAKTIQQELAYTSLRTVTASVEIWYDPDPTSTVIEEDKVFVESFFAIPDEEVESKIH
LQSPWLLRLELDRAKMIDRKLDMQFVANRIAESFKTDLFVIWSEDNSEKLVIRCRVLGGA
DKEDEETDSIEEDIFLRQLENTMLNSVSLRGVKGIERVFMLEHDKVVTDEKGNITGQGVK
EWVLETDGVNLKAVMCMDGVDFTRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSY
VNYRHLALLCDLMTQRGHLMAITRHGINRADTGALMRSSFEETVEILMEAAAVGERDDCH
GIAENVMFGQMAPMGTGAFEVALDIDMLKDVIVDSGLPMQSMLSAHVGDGMTPGQVAMTP
YDSNSPSWNPDGSFKGETAAFSPLAGNREESANYSYLGFGQSPRGAGGMSPAAPGYSPSS
PNVYSPTSPYVPQSPFAGATSPFGASPYATSPFYSGRAPTSPTYSPTSPALNLTSPGYSP
TSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRCKYKYLLCSQYGWM
LIYYATSRFSKYEFTPFGAATIY
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgttgggccatcaattcacccactccgcggcccctctccgcaaagtcaaggaggtccag
tttggtatcctttcacccgaggaaatcaaagcgtactctgtcgcaaaggtcgagcacccg
gaggtcatggacgaagctactcacaagccaaagatgggcggactgatggacccccgcatg
ggcacgattgaccgtaatttcaagtgtcagacgtgtggggaagggatgtctgagtgccca
gggcattttgggcatatagagttggcacgacctgttttccaccctggcttcatcataaaa
gtgaagaaaattctggaaagtatatgtgtaaattgtgggaaactgaaagctgatatctcc
gacccccacttcgccgacaagattcggcatgttcgagatccaaagacgcgtatggccgtc
gtatggggtcactgcaaaggcaaaatgatctgcgaggccgacgagcctaaggaagatggc
gaagacggagcggctcaaggaccagcaaagcccgggcacggtggttgcggacatcctcag
ccacaaatacggaaggagggcttgaagttgttcttgcaatacaagaagtcgaaggacgat
gatgaggacatgaaatctctccaaccagacaagcgactattcaccgcttccgaggtgtac
acgacactgaagaagatctcggagtccgatctgcaccttcttggtctctcggacgagtac
gctcggccagaatggatgattcttactgtgatgcccgttcctcctccgcctgtacgcccc
agcatcgccgtggacggtggtgccatgcgctccgaggacgatctgacctacaagcttggc
gacatcatcaaggcatccgcgaacgtccgccgttgtgaacaggaaggagctccagcacac
gtcatcacggagttcgagcagttgcttcagtttcatgttgcgacatacatggacaacgat
atcgcagggatacctcaagcactgcagaagtccggtcgaccagtcaaggccattcgtgcg
cgtctgaagggaaaggagggtcgtctgcgtggaaatttgatgggcaagcgtgttgacttt
tcggcacgtaccgtcattaccggtgatccgaatctggagctcgatgaagtcggcgtaccg
aaaagtatcgcgatgacgcttacatatcctgaacgagtgactccgtacaatattgagtac
ctccaagaactcgtgcggaatggacccactacgtatccaggagctcgctatgtcgtccga
gacacgaacgaacgtatagacttgcgatacaacaagcgtgcagataccttcctccagttc
ggctggattgtcgagcgccatctgaaagacggagactttgttctcttcaatcgacagccg
tcactgcacaagatgagtatgatgagtcatcgagtccgactcatgccgtattccactttc
cgtctgaatctttccgtaactcctccctacaacgccgacttcgatggtgatgagatgaac
atgcatgtgccccagagtgaagagactcgcgccgagctgagtcagatagcttgggttcca
cgacagatcatctcgcctcaagcgaacaaacccgtcatggggatcgtccaggacaccctt
tgcggtattcgcaagttcactctccgcgacacattcctcgattggaaccaggttcagaac
atccttctttgggtaccagactgggatggctctgtgccaataccagcgatcatcaagcct
aagccaatgtggtctgggaagcagatcctcagcatggctattccccgcggtatcaacatt
catcgttccccagacccgaaatcagctaacccggtcttcgacgatggcatgctcatcgaa
aacggcgagatcatattcggtatcgttgacaagaagacggtcggtgcttcgcaaggcggt
ctcgtccacgtcgttttccgtgagaagggtcctgaggctacgcggacactcttcaccggg
ctacagaccgtcgtcaactactggctcttccacaacggcttcagtattggtatcggggac
accatcgccgacaggaagaccatggcgtacatcacccagcagatcacggagcggaaacag
aacgtgcagcagatcatcgaggacgccactcacgaccgtttgaagtccatgccgggtatg
actatccgagagtcgttcgagagcaaggtcgagcgagagctgaatctggcccgtgacgac
tccggtaaatatgcacagaagaacttgaaggaggacaacaacgtcaagcagatggtggtc
gccggttcaaagggttcattcatcaacatctcccagatgtctgtctgtgtcgggcagcag
tccgtcgagggccgtcgtataccgttcggtttccgccatcgcacacttccccacttcacg
aaggatgatttcagcccggaagctcgtggtttcgtcgagaactcgtacctccgcggcttg
acgccacaagaattcttcttccacgccatggccggtcgtgaaggtctcatcgacaccgcc
gtgaagaccgccgagaccggttatattcagcgccgactggtgaaggctctcgaagacgtc
atggtcaactacgatggaaccgtacgaaactctctgggcgatctcattcaattcgtctac
ggcgaggatggtatggacggtgcattcatcgagcgccaaaatatcgacacgtttgcgctc
aaccatcaggatttcgagcacaattaccgagtcgatgttacagacccggctggcggcttc
cttcccggtgttctccaagttggtattgacgacagctcaccggaattgcaggcgaagcta
gacgaagaatatgatcaattggtggaggatcgtcggacactgcgagaattcgtctttgcc
aacgccgacgctaacactccccattaccttcctgtcaaccttcaccgtatcgtccagaac
gctacccaaattttccatatcgacaaacggaaaccgagcgatctggaccctgtctacatc
gtcgacgccgtacgagacctcgccaaccgcctagtcattgtgcgcggagatgatagtttg
agcagggaggcccaggacaacgcaaccctcaacttccgcatgcaccttcgtgcgaccttc
gcctgccgccgagtcttggagcgacaccatcttacccgagaagcgttcgactgggttctc
ggcgaggtggagacgaagttcaacatgtccgttgtaaaccctggagagatgtgtgggacg
ctcgctgctcagtccatcggagaaccggccacgcagatgacgctcaacaccttccattac
gcaggtgtatccagcaagaacgtcacgctcggtgttccacgtttgaaggaaattatcaac
gttgcgacgaacatcaagactccctcgctcaccgtttacttgcaacccgaatttgctgca
cagtcgtcgcaggcgaagaccatccaacaggagttggcctacacctccttacgcaccgtc
acagcctccgtcgagatctggtatgaccccgaccccacgtcgaccgtgatcgaggaggat
aaggtcttcgtcgagtcgttctttgccattccggatgaggaggtcgagtccaagatccat
ctgcagtctccttggctgcttcgtcttgagctcgaccgtgcgaagatgatcgatcgcaag
ctcgacatgcaattcgtcgcgaaccggatcgcggagagcttcaagacggatctttttgtc
atctggagcgaagacaactcagagaagctggtaatccggtgtcgtgtgttgggtggtgcg
gacaaggaggatgaggagacagactctatcgaagaggacatcttccttcgtcagcttgaa
aacaccatgctcaactctgtgtcccttcgcggtgtcaagggcatcgagcgtgtgttcatg
ttggaacacgacaaggttgtcacggacgagaagggcaatatcactggccagggagtaaag
gagtgggtcctcgagacggatggcgtcaacttgaaggccgtgatgtgcatggacggtgtc
gactttacgcggacatattccaacagctgtgtcgagattttcaacgtcctcggaatcgaa
gccgctcgtgccgccatcatgaaggagcttcgtggagtcatcgagttcgatggttcgtat
gtcaactatcgccatcttgctctcctttgcgacttgatgacccagcgaggtcacctcatg
gccatcactcgtcacggtatcaaccgagccgacaccggagctttgatgaggtcgtcgttc
gaggagactgtcgagatcctgatggaggccgctgcagtgggagagagggacgattgccac
ggtatcgcggagaacgtgatgtttggacaaatggcgcccatgggtaccggtgcatttgag
gtcgccctcgacattgacatgctgaaggacgtcatcgtggactccggcctgcccatgcaa
agtatgctcagcgctcacgtcggcgacggtatgactcctggccaggtggctatgacaccc
tacgacagcaactctccttcgtggaatccagacggatctttcaagggcgaaacagctgca
ttctctccactcgcagggaaccgcgaggaaagcgcgaattactcgtacctcggtttcggt
cagagtccgagaggtgcaggtggtatgtcaccagcggcgcccggatacagtcccagttcg
cccaacgtgtactcacccacgtcgccttacgttcctcagtcgccatttgctggagcgact
tcaccattcggcgcgtctccatacgccacatcaccattctacagtggtcgagcaccaact
tcgcccacgtattcacccacgtctcctgccctgaatctcacgtcgccggggtattctcct
acaagccctcgctattccccgacgtcaccttcgttctctcctacctcaccacgctacagt
cctcaatctccttcgttcagcccgacgtcaccaaggtactcgcctacgagcccgtcgttc
agtccagcttctcctcgctgtaagtacaagtaccttctgtgctcacaatatggctggatg
ctcatatattatgcgacatctagattctccaagtatgaatttacccccttcggagccgca
accatttactga
DBGET
integrated database retrieval system
