Schistosoma haematobium (urinary blood fluke): MS3_00007671
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Entry
MS3_00007671 CDS
T05004
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
MS3_00007671 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00007671 (MSH6)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
MS3_00007671 (MSH6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
AAA_29
DUF1512
Motif
Other DBs
NCBI-GeneID:
75577696
NCBI-ProteinID:
XP_051066534
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Position
4:complement(22533626..22560663)
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AA seq
1186 aa
AA seq
DB search
MQKSLLTFFTRSPKPLSENSNKMCSESSKSTNSPVVCLRPPTGHDDEIMSSPTTSSVSKR
RRVIIESSDDEDEAPALSKEKAEAVNKHDLSRYSFSPQPVRQNGKKINEAADESPLEMSV
VAQVNEAFEDETVSWTHLSLPFLEPSKIKDINGRRPDHPEYDSHTLYVPEEFKTKQTPGM
RQWWELKSRYTDVILFFKVGKFYEMYHMDAMIGVKELGLVFMKGNFAHCGFPEVAFPRMA
DQLVRKGYKIARIEQTESIDAMNERCKRKSSSEKVVRREVCQLITPGTCTASTRSEISDV
KAVETGDVENDDESFRDLINLANPDSFLLAVVESHGNKSYPFAFGIGLLNASTGKINIGQ
FLDDRHCSRLRTFLSHHPPNQLLIERGTAGVAIKSLIKTSLSCVPTEFLTPTKQFWSAKN
TVQELETADYFPKRMSNITVDSNHISKVSSFPDKESWPDVLLNMLSEDDPLGRTVKPECE
LAFRCLGALIYYLRYCLIDREVLSLGFIDVYVPIDMKNANSQRSPGSIELFYDTQSQMVL
DSITLSNLDIIRNNVDGSQEGSLLQRLNTCCTFFGRRLLRQWITAPPCNPNVIRQRQLAI
ENLISISDIIPKLRDKLAQLPDLERLITKIHLLGSKGDKNHPDSRAIIFEEVQYSRKNIT
DFVATLDGFELSYKIIHEINHYSLSSAYLKKLVTLTSLSGNFPDISEKINYFKNAFDAEK
AKNEGRIIPEPGIDPEYDESVSEIKRIVEDMNKFLLKWSKTFGTRLAYWGTGRNRYQIEI
PESLASRVPNSWQLSSQRKGVKRYTCSETQEWLSELTAAEERKDASLRSIMQHIFSSFSE
SFTDWHMAMSCLAELDCLIALSSYSTNASDVMCLPEFIDLNSSTKPLLEIVDGIHPCLIN
TFSGGDVIPNDIKLGTTSSMIYSPTQHHTLRDTFNNVSVILVTGPNMGGKSTLMRQAALL
VILAHLGCRIPAKSCKLTPVDRIFSRLGASDRMLSGESTFLVELSETASILHHITPHSLV
LMDELGRGTSTHDGSALAGAVVSYLAKPNGRFFDGSGPRTLFSTHYHSLVDQVANTDPST
SDEDMNHLCIGLGHMSCMVEAESDSTNDLENITFLYKFIPGACPKSYGFNAARLAMLPDK
VIRLGLTKAKEFEKTTATFACLRTLLQGPVTVEDLRQWNSKLKTFL
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagagccttttgacattctttacgcgttcccctaaacctttatctgaaaattca
aacaaaatgtgttcagaatcctcaaaaagcacaaactctccagttgtttgcctgagacca
cccactggacacgatgacgaaattatgtccagccccactacttcgtccgttagcaaaaga
cgacgggttatcatcgaatccagtgatgatgaagatgaggcccctgctctttcaaaagaa
aaggcagaagcggtaaataaacatgatttgtcaaggtattcattctccccgcagccggtc
agacaaaatggcaaaaagataaacgaggcggcagacgaatctcctctagaaatgagtgta
gtcgcgcaggtcaatgaagcatttgaagatgaaactgtttcatggactcacttaagcctt
ccatttttagaaccctctaaaatcaaagatatcaatggtcgaaggcccgatcatccagaa
tatgactcacacacattatatgtcccagaggagtttaagactaaacaaactcctggcatg
cggcagtggtgggaattaaagtcgcgatacaccgacgtaattctgttttttaaggttgga
aagttttatgaaatgtaccacatggatgctatgattggcgtaaaggagcttggtttggtg
tttatgaaggggaactttgcacactgtggatttcctgaagtggcttttcctcgtatggct
gatcagcttgtccgtaaaggttataagattgctcgcattgaacaaacggaatcaattgat
gctatgaatgaacgatgcaaacgaaaatcttcaagcgagaaggttgtgcgaagagaagta
tgtcaacttataacaccgggtacttgcacagccagtacgaggtcagagatatctgatgta
aaggctgtggagactggtgatgttgaaaatgatgacgaaagctttagggatttgataaac
ttagccaatcctgattcatttttacttgctgttgtagaatcgcacggtaataaaagttac
ccttttgctttcggaataggtttattgaatgcatccactggcaaaatcaatattggtcag
tttttagatgatcgtcactgttctcgattacgtacatttttatcccaccatcctcctaac
cagttactaatcgagcgtggaactgcaggagtagctataaaatccttgataaaaacatct
ctttcatgtgttccaactgagtttctaacgccaacgaaacaattttggagtgcaaagaac
actgtccaagagttggaaacagctgattatttcccaaaacggatgtccaacatcaccgtt
gattcgaaccatatctccaaagtatcttcgttccctgataaggaaagttggccagatgtt
ctcttaaatatgttatccgaagatgatccactaggacgtactgtaaagccagaatgtgaa
ctagcatttcggtgtcttggtgcacttatttactacttacgttactgtttgattgatcgt
gaagtactatcactgggtttcattgatgtatacgtaccaatagatatgaagaatgctaac
tctcaaagaagtcctgggtctattgaattattttatgatacacagtctcagatggttttg
gacagtattacattatctaatttggatatcatacgaaacaatgtagatggttctcaagaa
ggttctttgctgcaacgtctcaatacttgttgtaccttctttggacgtcgtttgttgcgt
cagtggataactgctccaccatgcaacccaaatgttattagacaaagacaactggcaatt
gaaaatcttatttctatcagtgatataattcctaaactccgagacaaattagctcagttg
cctgatttagagcgtcttattacaaaaattcatttattgggttctaaaggtgataaaaac
catccagatagtagggcaatcatatttgaagaagttcaatattcaagaaaaaatattact
gattttgtggctactttagatggtttcgaattgagctataaaataattcatgaaatcaac
cattattcattaagctccgcatatttgaaaaaattagtaactttaactagcctgagcggc
aactttcctgatatcagtgagaaaataaattatttcaaaaatgctttcgatgctgaaaaa
gctaaaaatgaaggtcgaatcattccagaacctggtatagatcctgaatatgatgagtct
gtgtcggaaatcaaaaggattgttgaggatatgaacaagtttttattaaaatggagcaaa
acattcggtacacggcttgcatattggggaaccggtcgcaatcgttatcagattgaaatc
ccagaatctttagcatctcgtgttcccaactcatggcagctatcttcacagcgaaaaggt
gtcaaacgttatacttgttcagagacccaagaatggctaagcgagttaactgctgctgag
gaacgaaaggacgctagtctacggtcgataatgcaacatatattttcatcgtttagtgaa
tcgtttaccgattggcatatggctatgtcttgtttagctgaattagactgtctaattgct
ctatcttcgtacagtacaaatgcctctgatgtgatgtgtcttccagaatttattgatcta
aattcatctactaaaccattactggaaatagttgatggaattcatccttgtctaataaat
acattttcgggtggagatgttattccaaatgatataaaacttggtacaacatcatcgatg
atatattcaccaacacaacatcatacgttacgtgatacgtttaacaatgtttctgttatt
cttgttactggtcctaatatgggtggaaaatcaactttgatgagacaagctgctttatta
gttatactagcacatttaggttgtcgcattccagccaagtcatgcaaactaactcctgtg
gatcggatattttcacgccttggtgcaagtgacagaatgctttcaggtgaaagtacgttt
ttggtggagttatcagagacagcatctattttacatcatatcactcctcatagtcttgtt
ttgatggatgaattaggtcgtggaacttccactcacgacggatcagccctagcaggtgca
gttgtctcttacttagctaaaccaaatggaagatttttcgatggctctggccctaggact
ctgttttcaacgcactatcacagcttggtagatcaagttgctaacacagacccatctact
tccgatgaagatatgaaccatctatgcattggcctgggtcacatgtcttgtatggttgaa
gcagaatcggattcaacgaatgatttggaaaatatcacatttctgtataaatttattcct
ggtgcatgtccaaaaagttatggcttcaatgcagctcgtttagctatgctacctgataag
gttatccgacttggtttaaccaaagcgaaggagttcgaaaaaaccactgcaacgtttgca
tgcctgaggacattattgcaagggccggttacagtggaggacctaagacagtggaattct
aaattaaaaacatttttataa
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