Streptococcus intermedius JTH08: SCIM_0928
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Entry
SCIM_0928 CDS
T02156
Name
(GenBank) ABC transporter homolog
KO
K18217
ATP-binding cassette, subfamily B, tetracycline resistant protein
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SCIM_0928
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sie02000
]
SCIM_0928
01504 Antimicrobial resistance genes [BR:
sie01504
]
SCIM_0928
Transporters [BR:
sie02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
SCIM_0928
Antimicrobial resistance genes [BR:
sie01504
]
Gene variants
Tetracycline resistance genes
Transporters
SCIM_0928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
AAA_15
AAA_21
RsgA_GTPase
AAA_22
Zeta_toxin
MMR_HSR1
AAA_29
nSTAND3
AAA_30
AAA_23
ATP-synt_ab_C
Dynamin_N
Motif
Other DBs
NCBI-ProteinID:
BAM23582
LinkDB
All DBs
Position
complement(1060720..1062456)
Genome browser
AA seq
578 aa
AA seq
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MSIISRLLKELRVVRTAFFFAVGIAVLATVTSQLSPLCLRNMIDGPLTQIGSGKDRQVQL
LQLAGLYIMVVVLGSILTYLGDRLLAHCGNKVAEHLRNEAYQVMQNLPISYFDDKPAGKI
ATRIVNDTETLRRQFYASLVSVLIQVLRIVFTYALLFYLSPLAASVLLLLLPAFYGIQVF
YKKLTDKPMKDFYDSRSDINNQVNELMHGASLIQLYHQEKTVLSEFNATARKMSQADKQI
VWVSALSSWPLTEFLKNTVLAVILTIVGRQFLGGRNVITAGVLFIYLNYIINLFEMMGFL
VRLFPNVQRSLETGKRVLELLDQPQEEDVKSQLAVVKGQVTFEHVSFAYEKGKTVLHNIS
FKAKKGETVALVGHTGSGKSSIMNLLYRFYDPKKGKIYVDQQDIQQYSRESLRSHMGIVL
QDPYLFTGTLATNVAMSRSGINREKVLESLEKVGAGDLLARCKEGIDEPVKDKGAAFSSG
ERQLISFARALYANPQILILDEATSHIDTETEELIQKAMAVVKEGRTTFIIAHRLSTIQE
ADQILVISEGKIVERGQHDTLVKQNGIYAQMSRLQQQV
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcattagtcgtttattaaaagaactaagagttgttcgaactgcattctttttt
gcggttggaattgctgttttagcaacggtgactagccaactgtctcctctctgtttgaga
aatatgatagacggaccgcttacacagattggaagcggaaaagatcgtcaggttcagctt
ttgcaattagctggattatacataatggttgtagttttggggagcatactgacttactta
ggtgatcgccttttagcgcattgtggaaacaaagtagcagaacatctgaggaatgaagct
tatcaggttatgcaaaatttgccgatttcttactttgatgataaaccggcaggtaagatt
gcaaccagaattgtaaatgatacggaaaccttacgaagacaattttatgctagtttggtt
agtgttttgattcaagttcttcggattgtttttacctacgctctattgttttaccttagt
ccgcttgctgcctcggtacttttactattgcttcctgctttttatgggatacaagtattt
tataaaaaactaacagacaagccgatgaaagacttttatgattcacggagtgatatcaat
aatcaagtgaatgaattgatgcatggagccagcttgatacagttatatcatcaggaaaaa
acagttctttcagaatttaatgcaactgctcgaaaaatgagccaagctgataaacaaatt
gtatgggtaagtgctctttcgtcttggccattaacggaatttttaaaaaatacagtgctt
gctgtcattttgacgatagttggccggcaatttttaggcggtcgcaatgtcattaccgct
ggtgtactgtttatctatctcaattatattatcaatttatttgagatgatgggttttctg
gttcggcttttcccaaatgtacaacgatcattggaaacaggaaaacgagttttagaattg
ttagatcaacctcaggaagaggatgtaaaatcacagttggcagttgttaaaggacaagtt
acatttgaacatgtgagctttgcatatgagaaaggcaagacagttctgcacaatattagt
tttaaagcaaagaaaggagagacggttgctttggtaggacataccggctctggaaaatct
tctatcatgaacctactttatcgtttctacgatcctaaaaaagggaaaatctatgttgat
caacaagatattcaacaatattctcgtgaaagtcttcgtagtcacatggggattgttttg
caagatccttatctattcacaggaacactagcaactaatgtagctatgagccgttcaggc
atcaatcgtgaaaaagttttggaatctttagaaaaagtcggtgcaggggacttgctggct
cgttgtaaagaaggaattgatgagcctgtaaaggataaaggggcagcattttcaagcggt
gaacgtcaattgatttcatttgctcgagctctctatgctaatcctcaaattttaatattg
gatgaagcaacttctcatattgatacagaaaccgaagaactgattcaaaaagcaatggct
gttgtaaaggaagggagaacaacttttatcattgctcatcgtttatcaaccattcaagag
gcagatcaaatcctggttatttctgaaggaaagattgtagagcgggggcaacacgacaca
ttggtaaaacaaaatgggatctatgctcaaatgagccgtctccagcaacaagtataa
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integrated database retrieval system
