Setaria italica (foxtail millet): 101764941
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Entry
101764941 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101764941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sita03400
]
101764941
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101764941
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
AAA_22
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
101764941
NCBI-ProteinID:
XP_004956779
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Position
II:30097521..30106279
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AA seq
1312 aa
AA seq
DB search
MASRRASNGRSPLVRKQSQITAFFSSSPTPSPSPSTPNAGAPKPSPSPLNPSAARRSTLA
AASPSPPKQPMPTPPPAQEEKRGKRDKKERDAAAPVAVAASPAAEVVGRRLRVYWPLDDA
WYEGRVEAYDAASGKHCVKYDXGDEEQVDLGKERFEWAAAGEESTPTPARKLRRLRRMSD
TAVAKSPAVAEDEEDGAGDSTEHEDWKKDTLAEDDLEEEVELDDEEEVVAVSSRKGKTRN
SLPVSGSAPSTLGFGLISASGSTISKKRKKVDVGSLDCAKRFSFEAVNTSGKVDPEMRIS
CGQKEQTTGNANTALTGEAAERFAQRDVEKFKFLGEGRKDAKGRRPGSPGYDPRTLLLPS
QFLKGLTGGQRQWWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCG
FPEKNLSVNLEKLAKKGYRVLVVEQTETPEQLELRRKAMGIKDKVVRREICAVVTKGTLT
EGEHLLANPDPLYLLSVTESHQQSSKKSEDTCTIGVCIVDVSTNKFIVGQFQDDPERHGL
CSILSEMRPVEIIKPGKMLSPETEKALKNNTREPLINELLPSTEFWDAEKTIHEIKQYYS
SADKQNNVNDVQDSMDCLPNLLNDLIGAGDKIYALSALGGSLFYLRQTLLDEKILLCAEF
EPLACSGLINNIRKHMILDAAALENLELLENIRTGGLSGTLYAQLNHCVTGFGKRLLKRW
IARPLYDRGAILRRQSAIATFKGVGHDYAVQFRKDLSRLPDMERLLARLFSSCDKNKRNS
SVVLYEDASKRLLQQFTAALRGCQQMFHACSSISTLICTEESQLNDLLSPGTGLPDVSSI
LDRFRDAFDWSDADSNGRVIPREGCDPEYDATCNAIQEIGSSLKEYLKKQRKLLRCASVD
YVNVGKDMYLIEVPESLGGSVPGNYELQSTKKGFYRYWTPELKDLISELSKAEAERESIL
KGILQNLIQLFVEHHSEWRQLVSVVAELDVLISLSIASDYFEGASCRPTIKESNGPDDTP
TFHARNLGHPILRSDSLGKGSFVPNDVKIGGPGNASFIVLTGPNMGGKSTLLRQVCLTII
LAQIGADVPAENLELSLVDRIFVRMGARDHIMSGQSTFLVELMETASVLSSATKNSLVVL
DELGRGTSTSDGQAIAASVLEYLVHQVQCLGLFSTHYHRLAVEHKDAKVSLCHMACEVGK
GEGGLEEVTFLYRLTPGACPKSYGVNVARLAGIPASVLQRANEKSNDFEANYGKRHRMIK
DKHASAQSEDKFSAIRDLFRIVNAWPCPDGQAASINMLREVQKLAKVQAVEG
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgccgagccagcaatggccgctcgccgctcgtgcggaagcagagccagatc
accgccttcttctcctcctcccccaccccctcaccttccccgtccacgccgaacgccggc
gcgcccaagccctcgccctcgccgctgaaccccagcgcggcgcggaggtccacgctcgcc
gcggcctccccttcccctcccaagcagccgatgccgacgccgccgccggcgcaggaagag
aagagggggaagagggataagaaggagcgggatgctgccgctccggtggctgtggctgcg
tcgccggcggcggaggtggtggggaggcggctgcgggtgtactggccgctggacgacgcg
tggtacgaggggagggtagaggcctacgatgcggcctcaggcaagcactgtgtgaagtac
gacngaggcgacgaggagcaggtcgacctcgggaaggagaggttcgagtgggccgccgca
ggtgaggagtccaccccgacgcccgcgaggaagctgcggcgtcttcggcggatgtcggat
acagcggttgcaaaatctccggctgtggcagaggatgaggaggatggcgcaggggattcc
actgagcacgaggattggaagaaggatactctcgcggaggatgatttggaggaggaggtg
gaactggatgacgaggaggaggttgttgcggtgagttcacgtaaggggaagacgaggaac
tccttgccggtgtcaggttcagcgccatcgacattgggctttggcttgatatctgcatcg
gggtcaacaatttcgaagaagaggaaaaaggtggatgtgggttcattggattgtgctaaa
aggttcagctttgaagcagttaatacctctggaaaagttgacccagaaatgcggatcagc
tgtggccagaaggagcaaactacagggaatgctaatactgctcttactggggaggcagct
gagcgctttgcacagcgtgatgtggaaaagtttaaattccttggagaagggcgcaaagac
gcaaaaggcaggcgccctggaagcccgggctatgatccaagaacacttttattgccttcc
cagttcttgaagggtttgacaggaggacagagacaatggtgggaatttaaatcacaacac
atggacaaggttctgttcttcaagatgggaaaattctacgaactatttgagatggatgca
catgttggggcaaaggaccttgatcttcagtacatgaagggtgaacaacctcactgtgga
ttcccagagaagaatttatcagtgaacttggagaaactagctaagaagggttatcgagtt
ctggttgtggagcagactgaaacacctgagcaacttgaactccggcgtaaggcgatgggt
ataaaggacaaggttgtgaggcgtgaaatatgcgcagtggtcacaaaaggaacactgaca
gaaggagagcacctactggcaaacccagatccattgtatctcctttctgtgactgaaagt
caccaacaaagttcaaagaagagcgaagacacttgtaccattggtgtttgcatagttgat
gtttctacaaacaaatttattgtaggacagttccaagacgatccagagcgccatgggtta
tgttcaattttgtccgaaatgaggcctgtggaaatcatcaagcctggtaaaatgctgagt
ccagaaactgagaaggcactaaagaacaacacaagggagcctttaataaatgagttgctt
ccatccacagaattctgggatgcagaaaagactattcatgagataaagcagtactacagc
tcagcagataaacaaaacaatgtcaatgatgtacaggacagcatggactgtctgcccaac
ctattaaatgacttaattggagcaggtgataaaatatatgcactttctgctcttggaggt
tccttattttatttaaggcaaacccttctggatgagaaaatacttctatgtgctgagttt
gagccccttgcatgctcggggctcatcaacaatatccgaaagcatatgatacttgatgca
gcagcactggaaaatctagaacttttagaaaatatcagaactggtggcctgtcagggacc
ctgtatgcacagttgaaccattgtgttactggatttgggaagaggctgcttaaacggtgg
attgcaaggccattgtatgatcgcggagcaatactaaggcgtcaaagcgctattgctact
ttcaagggagttggacatgactatgctgttcagtttcgtaaggatttgtctaggctacct
gacatggagcgcttgcttgcacgtcttttctctagctgtgacaaaaacaagagaaattca
tcagttgttctttatgaagacgcatcaaagagactgcttcaacagttcaccgctgctctt
cgtggttgccagcagatgttccatgcatgttcttctattagtacattgatatgcacggag
gagtctcaactaaatgatttgctctcaccaggcacagggctaccggatgtatcatctatt
ttagaccgattcagagatgcatttgattggtcagatgcagacagcaatggtcgggtcatt
ccccgtgaaggttgtgatcctgaatatgacgccacttgcaatgcaatacaggagatcgga
tccagtctaaaagaatacctgaagaagcaacggaagcttttgcgatgtgcatcggttgat
tatgttaatgttggaaaagatatgtacctaattgaagtgcctgagagcctgggaggttct
gttcctggaaactatgagttgcagtctacaaaaaagggtttctataggtactggacgcca
gaactgaaagacctaatatcagaactttcgaaggctgaggcagagagagaatcaatattg
aaaggcattcttcagaatttgattcagctatttgttgagcatcacagcgagtggaggcaa
ttggtttctgttgttgctgagcttgatgtcttaataagtctttctattgcaagtgattat
tttgagggcgcaagttgccgtccaactatcaaagaatcaaatggcccagatgatactcct
actttccacgccagaaatcttggacaccccattctacgaagtgattccttaggcaagggt
tcttttgtaccgaatgatgttaagataggtgggccagggaatgccagctttattgttctt
actggtccgaatatgggtggtaaatcaactcttttgcgccaagtttgtcttaccattata
ttggctcagattggagcagatgttcctgcagaaaaccttgaactttctcttgttgaccgt
atctttgttcgaatgggagcaagggatcatattatgtccggccaaagtacattcttggtg
gagctcatggaaactgcctcggtgctttcatcagctaccaagaattctctcgtggtttta
gatgagcttgggcggggtacatcgacttctgatggacaagctattgcggcctctgttctg
gaatatctagttcatcaggtgcagtgtctaggcttgttttctacacattaccataggtta
gctgtggaacacaaggatgcgaaggtatctctatgtcatatggcatgcgaggtaggcaag
ggagaaggaggtctggaggaagtgactttcctttatagattaactcctggtgcatgcccc
aaaagctatggtgtaaatgttgctcgattggcaggaatacctgcttcagtgcttcagagg
gctaacgagaagtcaaatgactttgaggccaattacgggaagcgacaccgtatgatcaaa
gataagcatgccagtgcacagagtgaggataagttttctgccatcagggatttattccgc
attgtgaatgcatggccttgtcctgatggtcaggcagcgagtataaacatgctccgtgaa
gtgcagaagcttgccaaggtgcaggctgtggaaggttaa
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