KEGG   Shewanella japonica: SJ2017_3122
Entry
SJ2017_3122       CDS       T04959                                 
Name
(GenBank) Riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
sja  Shewanella japonica
Pathway
sja00740  Riboflavin metabolism
sja01100  Metabolic pathways
sja01110  Biosynthesis of secondary metabolites
sja01240  Biosynthesis of cofactors
sja02024  Quorum sensing
Module
sja_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:sja00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    SJ2017_3122
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SJ2017_3122
Enzymes [BR:sja01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     SJ2017_3122
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     SJ2017_3122
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam APOBEC_N APOBEC2 APOBEC3 SNAD4
Other DBs
NCBI-ProteinID: ARD23391
LinkDB
Position
complement(3696252..3697391)
AA seq 379 aa
MSQWSILDISMMSLAISLAEKGRYTTRPNPNVGCVIAVGEQIIGQGYHIKAGGPHAEIHA
LNAVQTNQQQDKLSQATAYVTLEPCSHYGRTPPCALALINAGIKRVVIAEVDANPQVAGN
GIRMLQEAGIEVEVGLLTEQAKQLNLGFTKRMLTGLPLVTIKLAASIDGKTALSNGVSKW
ITGPEARADVQKLRARQCAIITGVETLLADNPSMNVRYEELGSVKEHLAESEIKQPLRVI
LDSKARLTNDFTLFEIASPILLVSCVEYPAEVRERFNNHVSCITIGANDDGRVDLHALFT
YLGKQCNTVLVEAGATLAGSVIKQGLGDELYLYQAMKLLGSQGRNLVQLDDYQAMSDIPK
IQLNDTRRVGADLRMIFAL
NT seq 1140 nt   +upstreamnt  +downstreamnt
atgtctcagtggtctatccttgatatttcaatgatgagtctggcaatttcattagcagaa
aaaggacgttatacaactcggcctaatccaaacgtaggctgtgtgattgccgttggcgag
cagattattggtcaaggttatcatattaaagcggggggcccgcacgctgaaattcacgct
ttaaatgcagtacaaaccaatcagcagcaagataaattaagccaagccactgcctatgtc
acccttgagccttgcagtcattatggccgaacccctccttgtgcattagcgttaataaat
gcggggataaaaagggttgttattgctgaggttgatgccaacccgcaagtggcaggtaat
ggtattcgaatgctacaagaagcgggaattgaggttgaagtcggattattaaccgagcaa
gccaaacaacttaatcttgggtttactaagcgaatgctcacaggcttgccacttgttacc
attaagcttgctgccagtattgatggcaaaacggcattgtctaatggggtgtctaaatgg
attacaggacctgaagcccgagcggatgtgcaaaagttacgtgctcgacaatgcgctatt
ataactggtgtagaaacgctacttgctgacaacccttcgatgaatgtccgttatgaagaa
ttaggcagtgtaaaagagcatttagcagaaagtgaaattaaacaaccattaagggttatt
ctagatagtaaagctaggctaacaaatgactttacactgtttgaaatagcgtctcctata
ctgttggtttcatgtgtggaataccccgcagaagtgagagaaagatttaacaatcatgtt
agttgtatcactattggtgcaaatgatgatggacgcgttgatttacatgcgttatttact
tatttaggtaagcaatgcaatacggttctcgtagaagctggagcaacattagcgggtagc
gtcatcaaacaaggcttaggtgatgaattgtatttatatcaagcgatgaagttactgggt
agccaaggtcgtaatttagtccagcttgatgattaccaagccatgtcagatatccctaaa
atacaacttaacgatacgcgtcgagtcggtgcagatctaagaatgatatttgctctataa

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