Scomber japonicus (chub mackerel): 128355301
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Entry
128355301 CDS
T09718
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo00310
Lysine degradation
sjo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
128355301 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128355301 (prdm2b)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128355301 (prdm2b)
Enzymes [BR:
sjo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
128355301 (prdm2b)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
128355301 (prdm2b)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
128355301 (prdm2b)
BRITE hierarchy
Motif
Pfam:
PRDM2_PR
zf-C2H2_4
zf-C2H2
SET
zf-C2H2_6
zf-C2HE
zf-C2H2_jaz
zf-C2HC_2
zf-C2H2_9
COPI_C
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
128355301
NCBI-ProteinID:
XP_053171522
LinkDB
All DBs
Position
3:complement(22250776..22264839)
Genome browser
AA seq
1721 aa
AA seq
DB search
MAITGGTVETLDEIPAHMWTGLPDCLSLGPSAINQSRIGVWATQLIPKGKRFGPFVGEKK
KRSQVTSNVYMWEIYFPARGWMCVDATDPMKGNWLRYVNWAHSSEEQNLFPLEINRAIYY
KVLRPIGPGEELLVWYTVEDNPEITAALEEERASSLSRKKSPRAKRVRRKLLERARQAGL
GEFKKTSGTKPTFKDMWDGGDGLKEEDERSSTPGPSQELQETHPMGSTDHRSVQDMSAVT
TDRGNGEEEEEEEEEEEEEEEDVNDLEVPNEVQQQTAQHSSLADSMQNRQPASSLSCSEE
SHKESQVKLVSSSLPGQDLEVDPDLDLEPDPDGDLEGDLHGESYPCQHCERHFSTRQGLE
RHIHIHAITHQQTQLFKCRYCSKSFGSQVGRRRHERRHESGPKKRPGSLAGTANLHSPVV
HTDGSSPDCISPTSHYIAIGAQFTGGPLHNSEIQRKELGPHVDRPFILDENGESKELHPC
KYCNKAFGTHTNMRRHQRRIHERHLLPKGVRRKGMLLQEASVQQQQLPDESPSTSPPPVY
VPSADTEDEVDRDDYAVDISKNISENLSFYIDGKIVSTSAVSTCEVIEVDSRNAALFGLD
TVLISPNQLSQALKVEGRTSATKQVSSIGQPATKRRTSTPPLVPSLKVETETASFTASSS
SSSSSTSSSSNLLVGGLFQQAADSSAFQREKTVYLSPKLKQLLQTQDIQKSTIALLTESH
RLASPQSVTSLQGASGRFKRRTASPPSSPQLSPTCKAESCKAEVASSYTLKVPKLENLSV
SPSGSAVDKDDRDTLSPPGNNTQGQPSSSGGNSCNQQPLDLSSAVNKRSDTVNKVLGDSA
LDLSLHRKSNAEADSKGGPAPQPLIKKRKPNTSMLEKVLMNEYVGLTLAEEGPAVLANLS
CFHSRSPNVASESAHPSPPSLTPVTMNPSSPGNSSVTSPTPPPPVLPTIPSPPAMPSSPL
SQPSDSSAPLPVLSPKMSPRSVEHKHLSDSEEILSAEENKDEENNHISEPLDSPNTPLKD
PFYRSTPSPPEPTSVDLPTTDDVSLTMTCNSLLNGKMNKDSDSVTEKSLNSDFAALSSQP
ESSSSSSTSPPPPHDSSPSLHPQSLPQIRIKEEPQHGKDELSIMNHTPQDGVDSSPQPAA
PDKPSEAEEVDSTYCKTFVCNVCEEPFNSMKELSGHITEHAADWPFKCEFCVQLFGEAPA
LLAHRTTLHGVGRIFVCSVCSKEFAFLCNLQQHQKDLHPNETCTHTSVERGKLRPQNYTD
PSRAKEESSPSTPAPEISEEAAPSDDSDLIKNEPNVNGDHAEDGAEDPNEELYTTIKIMA
SEGGKPKGPDVRLGINQHYPSYKPPPFPYHSRSHAGSVASATNFTTHNIPQTFSTAIRCT
KCGNSFDNMPELHQHILACANASDKKRYTPKKNPIPLKQIVKCLNGVVSPSAAAVGQSPF
RRMGQPKRLNFNQDTGKTKMSALNKKKNQLVQKAISQRNKAATTAKKATIKSEEEQASNV
CPHCSREFTYPASLSKHMAVSCPMKPVAKKGKKGLAEVKKEAGSAVDKNMNLRRKASESE
ISQTEPERKPLGKTRARSSGTTDPEPSLASKGKTAAALGRLKRPASFPAPLSVGKKRKKG
QVQSLPPTPTAPDTPNDTAQRPAMRMQRMGKEAAPKRLAEAKSPPPQQLKKEERFSLRTR
ERVGGPVTRSLHTANAAPSAEVKTEEPPVQEPKETQEVLMK
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atggccattactggtgggacagtggaaactcttgatgaaattccagcccacatgtggaca
ggtctgcctgactgtttgagtcttggaccttctgctatcaatcaaagccgtatcggtgtc
tgggcaacgcagctcattcctaaaggcaagaggtttggcccgtttgttggagagaagaaa
aaaaggtcccaggtgaccagtaatgtttacatgtgggagatatatttcccagcacggggc
tggatgtgcgttgatgccacagaccccatgaaggggaactggctgcgctatgtgaactgg
gctcactccagtgaagagcagaatcttttccccttggagatcaacagagctatttactac
aaagttttaaggcctatcgggccaggagaggagctgctggtgtggtacactgttgaagac
aaccctgagataacagctgcactggaggaagaaagagccagcagtctgagcaggaaaaaa
tcacccagggcgaagcgagtgagaagaaagctgctggaaagagccagacaggctggtttg
ggtgaattcaagaaaacaagtggaaccaaacctactttcaaggacatgtgggatggggga
gacggtctgaaggaggaggatgagaggtcatcaaccccagggccttcacaggaactccag
gaaacccatcccatgggaagcactgaccatagaagtgtgcaggacatgtcagcagtaacg
acagacaggggaaatggggaggaggaggaagaagaagaggaagaagaagaagaagaagag
gaggatgtaaatgacttggaggttccaaatgaagtacaacagcaaactgctcaacattcg
tctttagctgattccatgcaaaataggcaacccgcctcctctctgagctgcagtgaagaa
agccataaagagtcacaggtaaaattggtatcttcctcgcttccaggacaagatctggag
gttgatcctgatcttgaccttgaacctgatcctgatggtgaccttgaaggtgatctccat
ggagagtcatatccctgtcagcactgtgaacggcacttctccaccagacagggtctggag
cgccacatacacattcatgccatcactcaccagcaaacgcaactgttcaagtgccggtac
tgcagtaaatcctttggctcacaggtggggcggcggcggcatgagagaaggcatgaaagc
gggcccaagaaaaggcctggctccctggctggaacagccaatctacacagtcctgtggtg
cacactgatggttcaagtcctgactgcatcagcccaactagtcactatattgccataggg
gctcagtttactggaggacctctgcacaactctgagatacagagaaaggagttgggacct
catgttgaccgtcccttcatattggatgagaacggggagtctaaagagctccatccttgc
aagtactgtaataaagcatttggcacacacacaaacatgcgcagacaccaacgcagaata
cacgaacggcacttgttaccaaagggggttcgcaggaaaggcatgctgctgcaggaggca
tcagtgcagcaacagcagctgcctgatgagtcacccagcaccagtcctccacctgtctat
gtgcccagtgcggacacagaagacgaggtagacagggatgattatgcagttgacatatcc
aaaaacatctctgagaatctgagcttctacattgatggcaagattgtctccaccagtgca
gttagcacctgtgaggtgatagaggtagactccagaaatgcagctctgtttggtctagac
acagtcctaatcagcccaaatcagctcagtcaagcactgaaggtggagggtagaaccagt
gccacaaagcaggtctccagcattggccagccagcaacaaaaagaagaacctctacaccc
ccacttgttcccagccttaaagtggagacagaaacagcgtctttcacagcctcttcatca
tcttcatcatcctctacatcttcttcatcaaacttgctagtaggcggacttttccaacaa
gccgcagattcatcagcctttcaacgagagaaaacggtttatctctcgcctaagctgaaa
caactccttcagacccaagacattcagaaatcaaccattgctctgttaacagaaagccat
agactggcctccccgcagtcagtcacatcactacaaggggcttcgggcaggtttaaaaga
agaacagcctctcccccatcatctccgcagctcagtcccacatgtaaagcagaaagctgt
aaagccgaggtggcaagctcgtacaccctcaaggtgcctaagctggaaaacctcagtgtg
tctccttctggaagcgcagtggacaaagatgacagggacacccttagcccccctggaaat
aatactcaaggccaaccctctagtagcggaggaaattcctgtaatcagcagcccttagac
ctgtcaagcgctgtcaacaagagaagtgacactgtgaacaaggtgcttggggattcagct
cttgatttaagcttgcatcggaagagcaacgcagaggccgattcaaagggaggtccagca
ccacagccactaataaaaaagagaaagccgaacaccagcatgcttgaaaaggtgctgatg
aatgagtatgtaggtctaaccttagctgaggagggccctgcggttttagcaaaccttagt
tgttttcactctcgctctccaaatgttgcatcagagtctgcccacccctctccaccctct
ttgacccctgtcaccatgaacccctcttcacccggcaactccagcgtcacatccccaaca
ccgcctccccctgtactacctaccataccctctccgccagcaatgccaagctcacctctc
tctcagccttcagactcctctgcacctcttcctgtcctctcgccaaaaatgtctccaaga
tcggttgagcacaaacacttgtcagactcagaggagattttgtcagctgaagaaaacaaa
gacgaggaaaataaccatatctctgagccactggactctccaaacactccacttaaagat
cccttttatcgttcgacaccaagccctcctgagccaacatcagtagatctgcccactaca
gatgatgtttctctgacgatgacatgcaacagtctgctaaatggtaaaatgaacaaagac
tccgactccgtaacagagaaatctttgaattctgactttgctgctctctcatctcagcca
gaatcctcatcatcatcctcaacatctccgcctcctccacatgattcatccccgtctctg
catccacaatctcttcctcagattaggataaaagaagagcctcagcacggcaaagatgag
ctgtccattatgaatcatacacctcaggatggtgttgactcttcacctcagcctgctgct
cctgacaaaccctctgaggcagaggaagtcgactcgacgtactgcaagacttttgtgtgt
aatgtctgtgaggagccgttcaactccatgaaagagctcagtgggcatattacagagcat
gctgcagattggcccttcaagtgtgaattctgtgtgcagctgtttggtgaagccccagcc
ctgcttgctcaccggacaacactacacggagtgggcaggatttttgtgtgctcagtttgt
tccaaggagtttgcatttctctgtaaccttcagcagcaccagaaggatctgcatccaaat
gagacatgcacacatacctctgtagagcgtggcaagctcagaccacaaaactacacagat
ccatccagagccaaagaggaaagcagtccctcaacaccagcaccagagatatctgaagaa
gctgctccatccgatgactcagatttaataaaaaatgagcctaatgttaatggtgatcat
gcagaggatggagcagaagaccccaatgaggagctgtacactacaataaagatcatggcg
tcagagggagggaagcctaagggtccggacgtccgccttggcattaatcaacactacccc
agttataaacctccacccttcccctatcacagccgttcccatgctggctctgtggcctcg
gctacaaacttcaccacccacaacataccacaaacgttcagcactgccattcgctgcacc
aagtgcggcaacagctttgacaacatgcccgaactgcaccagcacatactagcctgtgcc
aacgctagtgataagaagcgttacactcccaagaaaaaccccatccccctcaagcaaata
gtgaagtgtctgaatggggttgtgtcaccctcagctgctgctgtaggccagagtcctttc
cgtagaatgggtcagccaaagagacttaattttaatcaagatactggtaaaacaaaaatg
agtgccctcaataagaagaaaaaccagcttgtccagaaggctatttcacaaagaaataaa
gctgccactacagcaaagaaggctaccattaaatctgaagaagagcaggcctctaacgtc
tgcccccactgcagtcgggagtttacttatcccgcgagtctcagtaaacatatggcagtc
agctgtcccatgaagcctgttgcaaaaaagggcaaaaaaggtctagcagaggtgaaaaaa
gaagcagggtctgcggtagataaaaacatgaatcttaggcggaaagcttctgaaagtgaa
atatcacagacagagccagagcgtaaacctttgggaaagaccagagctcgtagctctggc
acgacagaccctgaaccatccctggcaagcaaaggaaaaactgctgctgcactgggccga
ctaaagaggcctgcttcgttcccagcaccattgtctgttggcaaaaaaaggaagaagggc
caagttcagtctctacctcccaccccgacagctccagacactcccaatgacactgcacaa
cggccagccatgagaatgcagcgcatgggtaaagaggcagcacccaagagattagcagaa
gccaaatcaccaccaccacaacagctgaaaaaagaggagcggttctcccttcgaacaagg
gagagagttggtggtccagtcaccaggagcttacacacagccaacgcagctccttctgct
gaggttaaaactgaggaaccaccagttcaagagccaaaagagactcaggaggtgctgatg
aagtga
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integrated database retrieval system
