KEGG   Scomber japonicus (chub mackerel): 128362039
Entry
128362039         CDS       T09718                                 
Symbol
polr2eb
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03020  RNA polymerase
sjo03420  Nucleotide excision repair
sjo04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    128362039 (polr2eb)
  09124 Replication and repair
   03420 Nucleotide excision repair
    128362039 (polr2eb)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    128362039 (polr2eb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sjo03021]
    128362039 (polr2eb)
   03400 DNA repair and recombination proteins [BR:sjo03400]
    128362039 (polr2eb)
Transcription machinery [BR:sjo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     128362039 (polr2eb)
  RNA polymerase III system
   RNA polymerase III
     128362039 (polr2eb)
  RNA polymerase I system
   RNA polymerase I
     128362039 (polr2eb)
DNA repair and recombination proteins [BR:sjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      128362039 (polr2eb)
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C NYD-SP12_N
Other DBs
NCBI-GeneID: 128362039
NCBI-ProteinID: XP_053178652
LinkDB
Position
7:11846105..11849618
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgacgaagaggaaacatacagactatggaagattcgcaaaaccatcatgcagttg
tgccacgacagaggctacctggtgacacaggacgagttggaccaaacactggaggagttc
aagagtcagtttggagacaagcccagtgagggtcgtcccagacgcacagacctcactgtg
ctggtggcgcacaacgatgaccccactgatcagatgtttgttttctttcctgaggagcca
aaggtgggaatcaaaaccatcaagatgtactgtcaaaggatgcaggaggagaacatcaca
cgagccatcattgttgttcagatgggcatgacaccttctgccaaacagtctttagtagac
atggcgcccaaatatatattggaacagtttctacaacaggagctgcttattaacatcaca
gagcatgagcttgttccagagcacattgttatgacaaaagaagaagtgactgaactcctg
gcaagatataaattaaaggaaagtcagttgccaaggatccaagctggggaccctgtggct
cgttactttggcttgaaaagaggacaggtagtaaagatcatcagaccgagtgaaacagct
gggaggtacatcacatacagactggttcagtga

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