Scomber japonicus (chub mackerel): 128378570
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Entry
128378570 CDS
T09718
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04020
Calcium signaling pathway
sjo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
128378570
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128378570
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128378570
Ion channels [BR:
sjo04040
]
Ligand-gated channels
Glutamate (ionotropic)
128378570
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
NMDAR2_C
Motif
Other DBs
NCBI-GeneID:
128378570
NCBI-ProteinID:
XP_053194109
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All DBs
Position
18:27459537..27528480
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AA seq
1414 aa
AA seq
DB search
MGVRLGCLSDSPWWPPLPLLLLLFCTVPCCSGRPFGIPIPSVNVAVVFSGSAYQTEIKGR
LSRENFMDLPLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVAQILD
FISTQTSVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQINGMFKVMEEYNWDSFVVIT
SLYPGYETYVDYIKSFTDTSYFMWELQDVLTFDMSADGMNDIRARRLLQQIDAQVLLVYC
SHEEAQYLFSMASEAGLVGPGYIWIIPSLAVGNPDIPPPDSFPVGLISIITDRWRMSLRK
RVRDGVAIVVKGVQSFRKQRGFVPEGHSDCHNPLKPSTTNDTLFRHMLNVTWEHNDFSFN
SNGYLVNPAMIIITLDRERQWDKVGNYETGILQMRYPVWPRYGSYLEPVSDYRHLTVATL
EERPFVIVESVDPVTGTCVSNTVPCRRQSNKTEAIVGHTEPYTKLCCKGFCIDILKKLSR
TIKFSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFV
ETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFVFEYCSPVGYNRSLV
TAKDPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANL
AAFMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYN
QKGVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDS
RWKRHIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMG
LSLLVFAWEHLLYWKLRHSVRKSERLDFLLAISRGIYSCFNGVEHTDRNGSMQSPDVTTN
YSQANMLKMLQTAKNMVSSARVENSLDNATKTIENWSRRGADNVRVGLPPRVTTTDMAHG
RLPYISSITDNHLPYPQRALTPTFPIHYGDPTTQPLLDKPRVVTRPTPLRYTLPTRNSQH
VLERTLPISSLSSPHIAIRDPAPSGPPNPHHSSRLYVENQPRHPTSSFVPYREFQVPDIY
LEHKGPLRRKFSYPPDCVSRRRRSHSYVFDAADPRVRGEYNEPRSCLAELRANHLLNNHA
HADASAMACTGHYPGGSTSCNSCMKSYLEPEMDDVPLLGKDKLNRRASFLKATWGNDRVH
QVDETKPSTSTSPSNRIDMPDLFPRVVVANPKPHKLYGSLGHNLSCYPLAAEPAYLDPAH
MRSYPYKQKLKYSESTRLPSYREAILQNAAALRRSSSTVVHRHYSTYLNSYTDLPVYVGP
LAQGPPQFYDSSKDMCHLFPCTSHCPDNAAMLPRMSDRQMVYQNNMFGGYDGTGKREDPG
SGSRERRQVLVARRVNSPYVPKPWGRVSSLESEV
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtctaggctgcttgagcgactccccgtggtggccgccgctgccgctgctg
ctgctgctgttttgtactgtcccctgctgttcgggccggcctttcgggattcccataccc
tcggtgaatgtggcggtggtgttcagcggctcggcctaccagacggagattaaagggcgg
ttgagccgtgaaaacttcatggacctgcctctggaggtgaaccccatcactgtgctggtt
aacaacaccaacccacgggcgctgctcacccgcatctgtgacaccctctccaccaaccgc
gtgcatggcgtggtgtttgaggacaacgttgggtcggaggccgtggcacagatcttggac
ttcatttccactcaaacgtctgtgcccatcgtggggatcagtggaggctctgctgttgtg
ctgccctacaagggcgaaggctctaacttcctccagctgggctcctccatcgagcagcag
atcaatggcatgttcaaggtgatggaggagtacaactgggacagcttcgtcgtcataacc
agcctctacccgggctacgaaacctacgtggattacatcaagtccttcacagacaccagc
tacttcatgtgggagcttcaggatgtgctgacgttcgacatgtccgccgacggcatgaac
gacatccgagcacggaggcttctgcagcagatcgacgcccaggtgctgctggtctactgc
tctcacgaagaggcccagtatctgttcagcatggcgagcgaggccggactggtggggccg
ggctacatctggattatccccagtctggctgtggggaacccagacatcccaccgccggac
agcttccccgtcgggctcatcagcatcatcacagaccggtggaggatgagcctgaggaaa
agggttcgggacggtgtggccatcgtggtgaagggcgtgcaaagctttcggaaacagaga
ggcttcgttccagagggccacagcgactgtcacaacccgctcaaaccctctactactaat
gacacgctgttcaggcacatgttgaatgtcacctgggaacacaatgacttctccttcaac
agtaacggttacctggtgaatcccgccatgatcatcatcaccctggacagagagagacaa
tgggacaaggtggggaactacgagacggggatcctgcagatgagatacccggtgtggccg
cggtacggttcctacctggagccggtgtcggattacaggcacctgacagtggcgaccctg
gaggagcggcccttcgtcatcgtggagtcggtggatccagtgacgggtacatgtgtcagc
aacactgtgccctgccgacgacagtccaacaagacggaggctattgtgggtcacactgag
ccttacacgaaactgtgctgcaagggcttctgcatagacatcttgaagaagttgtcccgc
accataaagttctcctacgatctctacctggtcaccaacggcaagcacggcaagctggtc
cgcggcatttggaacgggatgatcggagaggtgttctacaagcgggcggacatggccatc
ggctcgctgaccataaacgaagagcgctcggagattatcgacttctccgtgccgttcgtg
gagacggggattagtgtgatggtggccagaagtaatgggaccgtctcaccatctgccttt
ctagagccgtacagcccggcggtctgggtgatgatgttcgtcatgtgtctgactgtggtg
gccatcacagtcttcgtctttgagtactgcagtccagtcgggtacaaccgcagcctggtc
actgctaaagatcccggcggtcccaccttcaccatcgggaagtcagtgtggctgttgtgg
ggaattgtcttcaacaactcggtccccatcgagaatcccaaaggcaccaccagtaagatc
atggtcctggtctgggctttcttcgctgtcatcttcctggcttcgtacacagccaacctg
gcagccttcatgatccaggagcaatacattgacactgtctctggactgagtgacaaaaag
tttcaaaagccgcaggagcagtaccctccgttccgctttggtacagtcccaaatggcagc
actgagcgcaacataaggagtaactaccctgagatgcactcccacatggtcaaatacaac
cagaagggagtagaggatgcccttaacagcctcaaaacagggaaactggatgcctttatc
tatgatgctgctgtgctgaattacatggctggcaaagacgagggctgcaagctggtgacc
attggcagtgggaaagtgtttgctaccactggttatggcatcgcactgcagaaggattca
cgttggaagcgacacatcgacctggctctgctccagttcctggctgatggtgacacacag
aagctgcagaccgtctggctcacaggcatctgccgaaatgagaagaaagaggtgatgagc
agtaagctggacatcgacaacatggcgggagtcttctacatgctgcttgtggccatgggt
ttgagtctgctggtttttgcttgggaacatctgctctactggaaactgagacattcagtc
cgcaaatcagagcgcttggatttccttcttgctatcagtcgaggcatctacagctgcttc
aatggagtagagcacactgatcgcaatggaagcatgcagagtccagacgttactaccaac
tactcacaagccaacatgctaaagatgctgcagacggcaaagaacatggtgtcgtctgcc
cgagtggagaactctctggacaatgcaaccaagacaatagagaactggagcaggcgaggg
gccgacaacgtgcgggtcggcctgccacccagagtgacgaccacagacatggcccacggc
cgcttgccctacatctccagcatcacagacaaccatttaccgtaccctcagagggccctc
acacccaccttcccaattcattacggggaccccaccacccagcccctgttggataaaccc
cgtgtggtgacccggccgaccccgctccgctacacgttgcccacccgcaacagtcaacat
gtattagagaggactctgcccatctccagcctcagcagccctcacatcgccattagggac
cctgctccctccggtccgcccaacccccaccacagcagcaggctgtatgtggagaaccag
ccccggcaccctacgtcctcgtttgttccttacagggaattccaggtgcccgatatctac
ctggagcacaaaggaccactgaggaggaagtttagctaccctcctgactgtgtgagccgg
aggaggaggtcccatagttacgtgttcgatgctgcagaccccagagtgagaggtgaatac
aatgaacctcgatcctgccttgctgagctgagggccaatcacctcctgaacaaccatgcc
catgcggatgcttctgccatggcctgtacaggacactacccaggcggcagcaccagctgc
aactcctgtatgaagtcctacctggagcctgaaatggatgacgtaccacttctggggaag
gacaaactcaaccgccgcgcctcattcctcaaagccacatggggcaacgatagggtccat
caggtagatgaaacaaagccctcaacatccacatctccctcgaaccgcatagacatgcct
gacctgtttccacgggtggtggtagccaatccgaagccccacaagctttacggcagcttg
gggcataacctgtcctgctaccccttggctgctgagcctgcctacttggacccagcccac
atgcgctcctacccttacaagcaaaagctcaagtactctgagtccacccggctgccctcg
tacagggaggccatcctgcagaatgccgctgccctgcgccgctcctcctccacagtggtg
cacagacactactccacctacctgaactcatacacagacctaccagtgtatgtggggccg
cttgcccaggggccgccgcagttctacgacagttccaaggacatgtgccacttgtttccc
tgtacgagccactgccctgataacgcagcaatgttgcctcgtatgagtgacaggcagatg
gtttaccagaacaatatgtttgggggctacgatggcacaggaaagagggaagacccaggc
tctgggagcagagagcggaggcaggtgttggtggcgcgcagagtcaacagtccctatgtg
ccaaagccctggggcagggtatctagcctggagtctgaggtctga
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