Sander lucioperca (pikeperch): 116049011
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Entry
116049011 CDS
T07345
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03020
RNA polymerase
sluc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116049011 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
116049011 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116049011 (polr2a)
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116049011 (polr2a)
Enzymes [BR:
sluc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116049011 (polr2a)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116049011 (polr2a)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116049011 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
116049011
NCBI-ProteinID:
XP_031154215
Ensembl:
ENSSLUG00000016988
LinkDB
All DBs
Position
17:13964342..13977553
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
VRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNANVQSSLEKEFDKMKED
REVLRAIFPTGDSKVVLPCNLDRMIWNAQKIFRINTRTPTDLNPLRVVEGLQDLSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTQEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPEDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggttacagaagggggaatcaaa
taccccgaaaccacagaaggaggacgtcctaaacttggtggccttatggacccaagacaa
ggggtcatagaacgaactggaagatgtcagacatgtgcaggcaacatgacagaatgccct
ggccactttgggcacatagaactggcaaagccagttttccatgttggcttcgtaacaaag
ataatgaaggttcttcgatgtgtctgcttcttttgctctaagctattagtggattcaaac
aatccaaagatcaaagacatcctgataaaatctaaagggcagcccaggaaacgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatctgtgaaggaggggaggagatggacaac
aaatttggaatggaacagcaggagactgaggaggacattaccaaggagaagggccatggt
ggctgtgggcgctaccagccacgtatccgacgctctggcttggagctgtatgccgagtgg
aagcacgttaatgaggattcacaggagaagaaaatcctgctgagtcctgagcgtgtgcat
gagatcttcaagcgcatctcagatgaagaggatgtcatcttgggcatggaccccaagttt
gcccgaccagaatggatgattgtaactgtgttgcctgttcctccactggcggtcagacct
gctgtagtaatgcagggctctgctcgcaaccaggatgacttgacccacaagctggctgac
atagtcaaaatcaacaaccagctgagaagaaacgagcagagtggtgctgcagctcatgtc
atagctgaggatgtcaaactgctccagtttcatgtagccaccatggtggacaacgaattg
ccaggcctgccaagggcaatgcaaaagtctgggcgccctctcaaatccttaaaacagcgt
ctaaaggggaaggaggggcgagtccgaggtaacctcatgggcaagcgtgtggacttctcc
gcccgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtaccacga
tccattgcagccaatatgaccttcccagaaattgtcacaccctttaatattgacagatta
caagagctggtgcgaagaggcaacagccagtacccaggagccaaatacatcatccgtgac
aatggagacagaattgacctgcgattccaccctaaaccaagtgaccttcacctgcagatt
ggctacaaggtggaaagacatatgtgtgatggtgacatcatcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagggtgcgaattctgccgtggtccacattt
cgactcaaccttagtgtcaccaccccatacaatgctgactttgacggggatgagatgaac
ctccacctgccccagtccctcgagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
acagctgtccgcaaattcaccaaacgagatgtctttttagagaggggtgaagtaatgaac
ctcctcatgttcctctccacttgggacgggaaagtgcctcagccagccatcctcaagccc
cgtcctctgtggacaggcaagcagatcttcagcctaatcattcccggacacattaatgtg
gtccgcacacacagcacccatcctgacgaagaagacagtggcccttacaaacacatctca
cctggggacaccaaggtcatagtggagaacggtgagttgatcatgggcatcctgtgtaag
aaatctctgggaacctcagccggctccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggtgactccattgctgatgccaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccctggtaacacactgaggcagacttttgagaaccaggtgaat
cgtatcctcaacgatgctcgtgacaaaacaggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggttctaagggctcaaagattaacatctca
caggttattgctgtggtggggcagcagaacgtggagggtaaacgaatccccttcggcttc
aaacaccgcacgctgcctcacttcattaaggatgattacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgactcccacagagttcttcttccacgccatggga
ggcagagagggtctgatcgacacagctgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggtgaagtatgatggcacggtgcgtaactcc
atcaaccaggtggttcagctgcgttacggtgaggacggcctggcaggagagaatgtcgag
ttccaaaacgtggcaacactcaaaccgtcgcacaaggcctttgaaaagaagtttaagttt
gactgcaccaatgagcgagcgcttaggcggatgctgcaggaagatgtagtaaaagacgtg
ctgacaaatgccaatgtgcagagttccttggagaaggagtttgacaagatgaaggaggac
agggaggtcctccgagccattttccccaccggggacagtaaggtggtgctgccatgcaac
ctggacagaatgatctggaacgctcagaagatcttccgcatcaacactcgaaccccaaca
gacctcaatcctctaagggtggtcgagggtcttcaggatctgagtaagaagctggtgatt
gtgaatggtgatgacccactgagcagacaggcccagcagaacgccactctgctctttaac
atccacctgcgctccacactctgctccaaacgcatgacccaggagttccgcctttccact
gaggctttcgactggctgctgggagagattgagaccaaattcaaccagtccattgcccac
ccaggtgaaatggttggcgctctggctgctcagtcgctgggagagccagccacccagatg
accctcaacactttccactacgccggtgtgtcagccaagaacgtaacactcggtgtgcct
cgtctaaaggagttgatcaacatctccaagaggcccaaaacaccctcgctgactgtgttc
ctgctgggtcaggcagcccgtgacgctgagagggccaaggacatcctctgtcgactggag
cacaccacactgcgaaaggtcacggcaaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttt
gacgtgacgcgcatttcaccttggctgctgcgcatcgagctcgaccgcaagcacatgact
gatcgcaagctgactatggagcagattgcagagaagatcaacgcaggttttggagatgac
ctgaactgtattttcaatgacgacaacgctgaaaagctcgttctgcgaatccgaatcatg
aacagcgatgagaacaagttccaggaggatgaggaggtggtggacaaaatggatgatgac
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaataagaagaagatcatcatc
acagaggacggtgagttcaaggccctgcaggagtggatccttgagacagacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtagatcccgtcaggaccacctccaacgacatt
gtggagatcttcacggtcttgggaattgaggcagtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggttcctatgtcaactaccgtcacttggctctgctctgt
gacaccatgacctgccgcggtcacctgatggccatcacacgtcacggcatcaaccgccaa
gacacaggaccacttatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcatcccatggcgagagtgaccccatgaaaggtgtgtcggagaacatcatgcttggccag
ctcgccccggctggtacaggatgctttgatttgctgttggatgctgagaagtgtaaatat
ggcatggagatccctacaaacatacctggcatcagcgtggctggacccactggaatgttc
tttggcacagtgccgagtcccatgagtggcatgtcacctgccatgaccccgtggaacaca
ggagcaacaccggcctacggtgcctggtcccccagcgtcggaagcggcatgacccccgga
gcagcaggtttctctcccagtgcagcatcagacgcaagtggcttctctccaggctattcc
ccggcctggtctcccactcctgggtctccgggatctccagggcctgccagcccgtacatc
ccatctccaggtggagccatgtcacccaattactcacccacctccccggcctacgagcct
cgctctcccggaggctacacccctcagagccccggctactccccaacatcgccctcctac
tcccccacttctccctcttactccccaaccagccccaactacagcccgacatctccttcc
tactcacccacctcgcccagttactccccaacctctccgtcctattctcccacgtctccg
tcttattccccaacgtctccctcctactcccccacatccccgtcctactcccccacatcc
ccgtcctactcccccacctcgccgagctacagccccacatccccgagctacagcccgacg
tcacccagctactcgcccacctcaccttcttactcccccacctccccctcttattctcca
acctctccatcctactcccccacttccccgtcctactcgcccacctctccttcctactcg
ccgaccagcccaagctacagccccacatcgcccaactacacgccaacctcacccagttac
tcccccacctctccctcctactcccctacatctccctcttactccccaacctcccccaac
tacaccccgaccagccccaactactccccaacctcgccctcgtactctcccacctctccg
tcctactcaccctccagtccacgttacaccccgcagtcgcccacctacacacccagctcc
ccctcatacagccccagctctccctcctactcccccacctcccccaaatacaccccgact
tcaccctcgtacagccccagctccccagagtacacccccacctctcccaagtactccccg
acgtcgccaaagtactccccgacgtcgccaaagtactccccgacttctcccacctactcc
ccaacgaccccaaaatacagccccacctctcctacctactcccccacctcccccacttac
acccccaccagccccaaatactcccctacctcccctacttactcgccaacttcacccaag
tactcacccacatctcctacgtactcgccaactagtcctaaaggctccacgtacagcccc
acctcccctggatacagccccacctcacccacctacagcccggccatcagccccgaagac
agcgacgaggagaacaattga
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