Solanum lycopersicum (tomato): 101255547
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Entry
101255547 CDS
T02665
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101255547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101255547
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101255547
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
101255547
FA (Fanconi anemia) pathway
Downstream FA components
101255547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Pex19
DUF6079
zf-CCHC_4
DUF4230
Motif
Other DBs
NCBI-GeneID:
101255547
NCBI-ProteinID:
XP_019071588
LinkDB
All DBs
Position
10:complement(61167423..61182033)
Genome browser
AA seq
1284 aa
AA seq
DB search
MKKFKRAPPPPPPSSSSATQGPKPSKHVVHIGGISVEFPYQPYGTQLAYMNRVIVTLDRA
HRDGHSHALLESPTGTGKSLSLLCSTLAWQQNCKSKNRYSYFTHSKPDPQALADPIGHGG
GFIPETQPSGNPDTAPPATSNGTKKKKAAPTIFYASRTHSQISQVIREYRKTSYRVPMAI
LASRKHYCTNVNVRGQDNIDEQCKLLLKGQEAGCSEFKNAHKVKGHPSIQKGGCHEAHDI
EDLVKVGQIVKGCSYFGARSLADDAELVFCPYNYIINPVVRRAMEVNIKGAIIILDEAHN
IEDICRDAGSVDVEEDILLQLQMELEQLIQSDTMIYQPLVEMTQDIRSWIARKKNTLEKH
GFQHYASCWTGDKALKELQEANVTKQCFPILQECASKAIKAASEAEPGTDHLSGMAASVL
EGLVSSLSYFFSGDGLHVCDYQLALQRYVKKSPGTAVGSWTQTFSLWCLNPAVVFREIAD
SCLSVILTSGTLSPMDSFSSELGVIFGTSLEAPHVIDVESQLCAAVISRGPRNYPLNASF
KTADSYAFQDALGTSLEEICKIVPGGCLVFFPSYKLMEKLSSRWKETGQWARLNARKPIF
TEPRGGQEEFESVLNGYYSSINQREKLVVGRKKKAKGSALSDGTPLEVSNENKKEGAAFL
AVCRGKVSEGIDFSDEKARVVIIVGIPFPNINDMKVDLKKKFNNTYKSSKNLLSGSEWYC
NQAFRALNQATGRCIRHRFDYGAVIFLDERFCEARNRAYISKWLRNSIRHHSNFDKSMEE
LKSFFRDVKERVGKAASSIQSSVVDNEENAFVTNSIRTRQKNQKFGTSDVKGLKEEENCA
LICQKAPLLCQSSCIDAMYNTSSTKMRIDAPHLMLNDDEDSDGRRAYIDLECDSAFSSRF
SGDPLIVSHAADPQLTIVKETPATDDIIHISSPQSFSKDEYSSSTIIQASSDLSDHLANH
STTHQKTELGCKSPCLTITPQKDVYTKANMISFDVESPINSSVNSHVGKRIKRLDLSSIV
HLDAEEFDTQMTKIPMHDSSTCKSRKFKDANQMIDSSSRISQLDKELEKSKSPWSSVLNN
YETSVVQSNLAMYERLQIFCSLCNNPLGLPENNLFVVCSRTLSTKTHLKSLWKGQPETPG
LSRHSIPILIANFSSVDQRIYERTSDNLSVQGIWCKEDGCVFKTIFCPFCVNSRHCLGVQ
VMASDASNVQLLNKVLLYCDCLMIKEPEASRKELSPSNNLSSDRGLSSIESFTFTPEQQN
LGGWRTTKSKMRLPKRSISSSAQR
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttaaacgagcaccgccgccgccgccgccatcgtcgtcgtcggcgacgcaa
ggtcctaaaccgtcaaagcatgtggtgcatataggtggtatttcggtggagttcccatac
caaccctacggcacacagttagcttacatgaatcgagttattgtgacactcgatcgagca
cacagggatggacattctcatgcgctgcttgagtctcctacaggtacgggaaagtcgctt
tcccttctttgctcgactcttgcttggcagcagaactgcaagtcgaagaatcgttattct
tattttactcactctaaacccgatccgcaagccctagctgatcctattggtcacggcggt
ggatttattcctgaaacgcagccttcagggaacccggatacagctccacctgctacaagt
aatgggacgaaaaagaaaaaagcggcacctaccatcttctatgcctcgaggacacattca
caaatttctcaagtgattcgggaatacagaaagacaagttatcgggtgccaatggctata
ctggcttcacgaaaacactactgtacaaatgtgaatgtacgaggtcaagacaacattgat
gaacaatgcaagttgttattaaagggtcaggaggctggatgctcagaattcaagaatgct
cataaagtaaaaggtcatccatccattcagaaaggagggtgccacgaggctcatgatatt
gaagatcttgttaaagttggacaaattgtcaaaggctgttcttactttggagcacgttcc
ctggctgatgatgcggagttagtgttctgtccatacaactatatcatcaatccagttgtt
agaagagcaatggaagtaaatataaaaggagccatcattattctcgatgaagcccacaat
attgaagacatttgtcgtgatgctggtagtgttgatgttgaggaggatattttgcttcag
ttgcagatggaactggagcaactcatacaatctgatacaatgatttaccaacctttggta
gaaatgacgcaggacataaggagttggattgctaggaagaaaaatactttagaaaagcat
ggtttccaacactatgcctcatgttggactggtgacaaggccttgaaagagctacaagaa
gccaatgtgacgaagcagtgctttccaattttacaggaatgtgcctcaaaggccatcaaa
gctgcctctgaagcagagccagggacagatcatttgagtggcatggcagcatctgtatta
gaaggactagtctcctcacttagttacttcttctcgggagatgggcttcatgtatgtgat
tatcagctagctttacaacgctatgtcaagaaaagtcctggaactgcagttggtagctgg
acacaaacttttagtttgtggtgcctaaatccagcagttgtattcagagaaattgctgat
tcttgtctatcagtgatcttaacatcagggactctatcaccaatggattcattttcctct
gaacttggtgttatttttggtacttctctggaagctccacatgttatagacgttgaatca
cagttatgtgctgctgtaatctcgagaggaccaagaaattatccgttgaatgcaagtttc
aaaacagctgattcatatgcttttcaggatgcacttggcacttctttggaggaaatatgc
aagattgttccaggtggttgtctggtattttttcctagctataagttgatggagaaacta
agcagtcgctggaaagaaacaggtcaatgggcccgacttaatgctcgaaagccaattttt
actgagccaagagggggtcaagaagaatttgaatcagttttaaatggttactacagttct
attaaccaaagggaaaaactagtggtgggaagaaagaaaaaggcaaaagggtcagctctt
agtgacggtactccacttgaagtttcaaatgaaaacaagaaagagggagctgcttttctt
gctgtttgtcgaggaaaggtttctgaaggcatagacttttctgacgagaaggctcgtgta
gttataattgttgggattccctttccaaacataaatgatatgaaagtcgatcttaagaag
aagttcaacaatacttataagtcatccaaaaatcttctgagtgggagtgagtggtattgt
aatcaagccttcagagctcttaaccaggctacaggtcgttgcattcgccatagatttgac
tatggagctgtgatctttttagatgaacgtttctgtgaggcaaggaatagagcttatatt
tcaaagtggttgcggaattcaataagacatcacagcaactttgacaagtcaatggaagaa
ctgaaatcctttttcagagatgtcaaagagcgtgttggcaaggcagccagttccatacaa
agttctgttgttgataatgaagaaaatgcttttgttaccaatagtataagaaccaggcag
aaaaaccagaagttcggcacttctgatgtgaaagggcttaaggaggaagaaaattgtgca
ttgatttgtcaaaaagctccgctcctatgtcaatcttcatgtattgatgccatgtataat
acatcctccactaaaatgagaattgatgcccctcatttgatgttaaatgatgatgaggat
tctgatggtcgaagagcttacattgatttggaatgtgattcagcattttcgtctaggttc
tctggagatccattgatagtttcacacgctgctgaccctcaattaactattgtaaaagaa
actcctgctactgatgacatcattcacatttctagtcctcaatccttctccaaggatgaa
tattcttcctcaaccatcattcaagcatctagtgacctttcagaccacttggcaaatcat
tctacaactcaccaaaaaactgagttgggttgtaagtctccctgtttgacgattactcct
caaaaagatgtctatacaaaagcaaacatgatatcatttgatgttgaatcgccaattaac
tcgagcgtcaattctcatgttgggaaaaggataaaacgtctggatttgtcatccatagtt
catcttgatgcagaagaatttgatactcagatgaccaagattcccatgcatgatagttct
acatgtaaatcaaggaagtttaaagatgcgaaccagatgattgattctagttcgagaatt
agtcaattagataaggaactggagaagtccaaatctccttggtcatcagtcttgaataac
tatgagacatcagtcgtgcagtctaatcttgctatgtacgaaagactacagatattttgc
tcactttgcaacaatcctctagggcttcctgagaataatttatttgttgtgtgctcacga
actttgtcaacaaaaactcacttaaaatctctttggaagggtcaaccagagacccctggt
ctgagcagacacagtatacctattctcatagctaacttttcgtctgttgatcaacgcatc
tatgaaagaaccagtgacaatttatctgttcaggggatttggtgcaaagaagatggctgt
gttttcaaaactattttctgtcccttctgtgtaaattccagacattgtcttggtgtacag
gtcatggcttctgatgcgtctaatgtccagttactaaataaggtgctgctttattgtgat
tgcttgatgataaaggagcctgaagcgtcaagaaaggaattatctccatccaacaattta
agctctgatagaggtctctcttccattgagagtttcacatttactcctgagcagcagaac
cttggaggatggagaactacaaaatccaagatgcgattaccaaaaaggagcatctcatct
agtgcacagaggtga
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