Serratia marcescens SM39: SM39_4505
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Entry
SM39_4505 CDS
T03592
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03030
DNA replication
smar03410
Base excision repair
smar03420
Nucleotide excision repair
smar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SM39_4505 (polA)
03410 Base excision repair
SM39_4505 (polA)
03420 Nucleotide excision repair
SM39_4505 (polA)
03440 Homologous recombination
SM39_4505 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smar03032
]
SM39_4505 (polA)
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_4505 (polA)
Enzymes [BR:
smar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SM39_4505 (polA)
DNA replication proteins [BR:
smar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SM39_4505 (polA)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SM39_4505 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SM39_4505 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH
Unstab_antitox
Ribosomal_60s
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BAO36425
LinkDB
All DBs
Position
4699502..4702303
Genome browser
AA seq
933 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAV
VFDAKGKTFRDDLFAEYKSHRPPMPDDLRAQIEPLHNMVKAMGLPLLVTPGVEADDVIGT
LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYGNLENIATLSFRGAKTMAAKLEQNK
EVAYLSYKLATIKTDVELDLTCADLTVSAPDVDTLQQLFKQYEFKRWLADVEAGVWLENK
KGAGAKATGGAKPAAAAAEAPKALAEAKLSQDGYVTILDEATFTDWLARLKKADVFAFDT
ETDGLDTLTANLIGLSFAIAPGEAAYLPVAHDYLDAPPQLDRAYVLEALKPLLEDDKALK
VGQNLKFDMSLLARYGIEMRGIAYDTMLESYVLDSVGGRHDMDSLADRYLGHKTITFEEI
AGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPQLKQSAELLTVFNEIEMPLLPV
LSHIERTGVLIDPAILSAHSQELAKRLAELEAQAHELAEEPFNLASTKQLQAILYEKQKL
PVLKKTPGGAPSTNEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVH
TSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRIVAADYSQIELRIMAH
LSQDEGLLKAFAEGKDIHRATASEVFGVPLDKVTGEQRRSAKAINFGLIYGMSAFGLARQ
LGIPRGEAQRYMDLYFERYPGVLDYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNAMRR
KAAERAAINAPMQGTAADIIKRAMIEVDAWLQGQEKPLVRAIMQVHDELVFEVHESVIEE
ASQRIRQLMEGSMTLAVPLKVDVGVGMNWDEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattgcagaaaacccactaatcctggttgacggttcctcctacctctaccgc
gcttatcacgccttcccgccgctgaccaactcggcgggcgagccgaccggcgcgatgtac
ggcgtgctgaatatgctgcgcagcctgctgctgcagtatcaaccgagccacgttgccgtg
gtgtttgatgccaaagggaagaccttccgcgatgatctcttcgccgaatacaaatcgcac
cggccaccgatgccggacgatctgcgtgcgcagatcgagccgctgcacaacatggtcaag
gcgatgggcctgccgctgctggtgacgcccggcgttgaggcggacgacgtcatcggtacg
ctggcgctggaggccgaaaaggccggccacgcggtgctgatcagcaccggcgacaaagac
atggcgcagctggtgacgccgaacgtcaccctgatcaacaccatgaacaacaccatcctc
ggcccgcaggaagtgtgcgacaagtacggtattccgccggagctgatcatcgacttcctg
gcgctgatgggcgattcatcggacaacattcccggcgtgccgggcgtgggtgagaaaacc
gctcaggcgttgctgcagggtatcggcgggctggatgcgctgtacggcaatctggagaat
atcgccacgctgagcttccgcggcgccaaaaccatggcggccaagctggagcagaacaaa
gaggtcgcgtacctctcctataagctggcgacgatcaaaaccgacgttgagctggatctg
acctgcgcggatctgacggtctctgcaccggatgtcgatacgctgcagcagctgttcaaa
cagtacgaattcaaacgctggctggcggacgtggaagccggcgtatggctggaaaacaag
aaaggcgcgggagcgaaagctaccggcggcgccaaaccggccgccgccgccgcggaagcg
ccgaaggcgctggcggaggccaagctgtcccaggacggttatgtcaccattctggatgaa
gcgacctttaccgactggctggcgcggctgaaaaaggccgacgtgtttgccttcgatacc
gaaaccgacggtctggataccctgaccgccaacctgatcggcctgtccttcgcgatcgcg
ccgggcgaggcggcttatttgccggtggcgcacgattatctggacgcaccgccacagctg
gaccgcgcctacgtgctggaagcgctcaagccgctgctggaggacgataaggcgctgaag
gtcgggcaaaacctgaagttcgacatgagcctgctggcgcgctacggcattgagatgcgc
ggcatcgcctacgacaccatgctggagtcctatgtgctggacagcgtcggcggccgtcac
gatatggacagcctggccgatcgttatctgggccataaaaccatcaccttcgaagagatc
gccggcaagggcaaaaaccagctgacgttcaatcagatcgcgctggagcaggcggcgcct
tacgccgccgaagacgccgatgtcacgctgcagttgcacctggcgatgtggccgcagttg
aaacagagcgcagagctgctgacggtgttcaacgagattgaaatgccgctgctgccggtg
ctgtcgcatatcgaacgcaccggggtgctgatcgatccggccattttgtcggcccactcc
caggagctggccaagcgtctggctgagctggaggcgcaggcccacgagctggcggaagag
ccgttcaacctggcgtcgaccaagcagctgcaggctatcttgtacgagaaacaaaagttg
ccggtgctgaagaaaactccgggcggtgcgccgtccaccaacgaagaagtgctggccgag
ctggcgctggattacccgctgccgaaggtgatcctggaataccgcggcctggcgaagctg
aagaccacctataccgacaagctgccgctgatgatcaacccggtcagcggccgggtacac
acctcgtaccatcaggcggtgactgcgaccggccgtctctcctcgagcgatccgaacctg
cagaacatcccggtgcgcaacgaagaagggcggcgcatccgccaggctttcatcgcgccg
gaaggctaccgcatcgtcgcggccgactactcgcagatcgagctgcgcatcatggcgcat
ctgtcacaggatgaagggctgctgaaggccttcgccgaagggaaagacattcaccgcgcc
acggcgtcggaagtcttcggtgtgccgttggataaagtgaccggcgaacagcgccgcagc
gccaaggcgattaactttggcctgatttacggcatgagcgccttcggcctggcgcgccag
ttggggatcccgcgtggggaagcccagcgctatatggatctgtacttcgagcgttacccg
ggcgtgctggactacatggagcgcacccgtcaacaggcttccgaacagggctatgtcagc
acgctggacgggcgccgcctgtacctgccggacgtccgctccagcaacgccatgcgccgc
aaggcggccgagcgcgccgccatcaacgccccgatgcagggcaccgcggccgatatcatc
aagcgtgcgatgatcgaggtcgacgcctggctgcaagggcaggagaagccgttggtgcgc
gcgatcatgcaggtgcacgatgaattggtatttgaggtgcatgagtcggtgatcgaagaa
gccagccaacgcatccgtcaattgatggaaggcagcatgactctggcggtgccgctgaag
gtcgacgtgggcgtcggcatgaactgggatgaggcgcactga
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