Scophthalmus maximus (turbot): 118317775
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Entry
118317775 CDS
T09850
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118317775 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
smau04090
]
118317775 (vcam1b)
04091 Lectins [BR:
smau04091
]
118317775 (vcam1b)
CD molecules [BR:
smau04090
]
Proteins
118317775 (vcam1b)
Lectins [BR:
smau04091
]
I-type lectins (Siglecs)
118317775 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
C2-set_2
V-set
Ig_C17orf99
C1-set
Ig_5
ICAM1_3_5_D2
C2-set
ICAM_N
BTD
REJ
MALT1_Ig
Motif
Other DBs
NCBI-GeneID:
118317775
NCBI-ProteinID:
XP_035502629
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All DBs
Position
13:132973..140795
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AA seq
828 aa
AA seq
DB search
MSAPCVCSSFISAVLLMSSWCVQGLRVDMFPKQPLFRLGERQQVACSVQDCPMMPSFSWS
RLEDRPLTAAVTTNRTRSVMTFDPVMIEHEGALLCKVVCGGDKIQRIISVNIYSFPSAPL
VRGQDQLRMGAESTLTCQVSDVYPSQLLNLTWSSRDRILQSVVGEPWSSSVRSEYRFTPQ
IQDSGANISCRATLNLPHLPAETRTRETTIPLNLLYAPVVTWISDSVLVMVDAPLALTCS
AEGNPEPTIIWRLRSTDGRSLPQGRGQGQGQGQDQGQGHQLVFAAVSLSDAGRYECEAQN
SEGNRTAAVDVTVHAPPTNTSISVGPGEDVVEGQHVTITCHSDGAPPPTLVLRREGVELH
RTDPASYLLSFSFSSVQVEDSGLYQCEASNQYGAQLVSSSVRVKVHPLQLEVSRPVSAAE
RGSVLVLTCRASGCVRPPSLTWRRTDRDRVVLQSTQQQDRRSQLHLRDLDLRDQGCYSCE
AQCDSVIRTRTTEVHVYSFPSDPVLMDPGPVPLGQQAILNCDVINVFSTNPLRIRWLSGN
TTLTSESYGFSGSLQNISSVLQHRVEAEKQVLTCRAELLTEDGDVWTSRRTSVHLQVHSP
PTNTSISVSPGEFVVEGQQVTVSCRSDGAPPPTLVLRREGAELHRSDTASSSLYFSLSSA
HLEDSAHYQCEASNQYGAELVSSSVRVKAPPRNTSVLVLPSPVVQEGQDITVCCRTISFP
PSAISLRKVTDGTKRHSETGCFLLVNVTARHSGLYQVNVTNELGYQVKLFSISVTERSSS
LPPGLSIVIIIVVCVAAAAAAAALLLDALRRSRKRGFYQLPQSAPSSA
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgccgtgcgtctgcagcagcttcatctcagctgtgttgctgatgtcatcgtgg
tgcgttcagggtctgcgtgtcgacatgtttcccaaacagcctctcttccgactgggggag
cgtcagcaggtggcctgctcggttcaggactgtcccatgatgccgagcttctcctggtct
cgactggaggaccgacctctgaccgccgccgtgaccaccaacaggacccggtctgtgatg
acctttgaccccgtgatgattgagcatgagggcgcgttgctttgcaaagtcgtctgtgga
ggagacaagattcagagaatcatctccgtgaacatttactccttcccatcagcccctctg
gtccgaggtcaggaccagctgagaatgggggcggagtcgaccctgacctgtcaggtgtca
gatgtttacccttctcagctgctcaacctcacctggtccagcagggacagaatcctgcag
agcgtcgtcggagaaccctggtccagctccgtccggtccgaatacaggttcactcctcag
atccaggattcaggggccaacatcagttgcagggccacgctgaaccttccccacctgcca
gctgagaccaggaccagagagaccaccatccccctcaacctgctctatgctcctgttgtg
acttggatctcggactctgtactcgtgatggtggacgctccgctcgctctcacatgttca
gcggagggaaatccagaaccaacgatcatctggaggctccggtcgacagacggtcggtct
ctgccgcaaggtcgaggtcaaggtcaaggtcaaggtcaagatcaaggtcaaggtcatcag
ctggtctttgcggcagtgagtctatctgatgccggacgctacgagtgcgaggcccagaac
agcgaaggaaaccggacggctgcagtggacgtcactgttcacgctccgcccaccaacaca
tccatctccgtgggtccaggtgaggatgtggtggagggtcagcatgtcacgatcacctgc
cactccgacggagctccgccccccacgctagttctgaggagggagggggtggagcttcat
aggactgaccccgcctcctacttgctgtccttcagcttctcgtctgtccaggtggaagat
tccggcctctaccagtgtgaggcctccaaccagtatggagcccagctggtgtccagctct
gtcagggtcaaagttcaccctctgcagctggaggtgagtcgtccagtctctgctgcagag
cgcggttcggttctggtcctgacctgcagagcgtccggatgtgtccgccccccctcccta
acctggaggaggacagaccgggacagggtcgtcctccagagcacgcagcagcaggacaga
cggtcccagctccacctgcgggacctggacctccgggaccagggatgctacagctgcgag
gcccagtgcgactcagtcatcagaaccagaaccaccgaggtccacgtctactcgtttccg
tctgatccggttctgatggatcctggtcccgtcccgctgggtcagcaggccatccttaac
tgtgatgtcatcaatgtcttttccaccaatccgctgaggatccggtggctctcagggaac
acgacgctgacgtccgagtcctacgggttctcgggttctttacagaacatctcgtctgtt
cttcagcaccgggtggaggcggagaagcaggtcctgacctgcagagcagagctgctgacg
gaggacggagatgtgtggacgtccaggaggacgagtgtccatctgcaggtccactctccg
cccaccaacacctccatctccgtgagtccaggtgagttcgtggtggagggtcagcaggtt
acggtcagctgccggtcagatggagctccgccccccactctggttctgaggagggagggg
gcggagcttcacaggagcgacaccgcctcttcctcgctgtacttcagcctctcgtccgcc
cacctggaagactccgcccactaccagtgtgaggcctccaaccagtacggagccgagctg
gtgtccagctccgtcagggtcaaagctcctccgaggaacaccagcgtcctcgtcctgccg
tcgccggtggtccaggagggacaagacatcaccgtatgctgccgaaccatcagcttcccc
ccatcggccatcagcctgaggaaagtgacggacgggaccaagagacattcagaaaccggc
tgcttcctattggtcaacgtcaccgccagacactctgggctgtaccaggtcaacgtcacc
aacgagctcggataccaggtcaaattgttcagcatcagcgtcacagagaggagcagcagc
cttcctcctggtctcagcatcgtcatcatcatagtcgtctgcgtcgctgctgccgcagcc
gcagccgcgctgctgctagacgccctgaggagatccaggaagagagggttctaccagctg
ccccagtcggctccatcctcggcctga
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