Scophthalmus maximus (turbot): 118318013
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Entry
118318013 CDS
T09850
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03020
RNA polymerase
smau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118318013 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
118318013 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smau03021
]
118318013 (polr2a)
03400 DNA repair and recombination proteins [BR:
smau03400
]
118318013 (polr2a)
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118318013 (polr2a)
Transcription machinery [BR:
smau03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118318013 (polr2a)
DNA repair and recombination proteins [BR:
smau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118318013 (polr2a)
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
118318013
NCBI-ProteinID:
XP_035503151
EnsemblRapid:
ENSSMAG00025013102
LinkDB
All DBs
Position
12:complement(4317256..4331323)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTVKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVSFIAKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRMTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERIHEIFKRISDEEDVILGMEPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIVRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAIIKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFRFDCTNERALRRMLQEDVVKDVLTNAHVQSSLEREYDKMKED
RDILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINARTPTDLNPLRVVEGVQELSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINTGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQGDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcatggaccgccctccggcgacagcgcatgcccattgcgcacggtcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacagaaggggggattaaa
taccccgaaacaacagaaggaggacgtcctaaactgggtggcctcatggacccaagacaa
ggcgtcatcgagagaactggaagatgtcagacatgtgcaggcaacatgacagaatgtcca
ggccactttgggcacatagaactggcaaagccagttttccacgtcagcttcatagccaag
ataatgaaggttctccgatgtgtctgcttcttttgctccaagctattagtggattcgaat
aatccaaaaatcaaagacatcctgataaaatctaaagggcagcccagaaagcgcatgaca
catgtgtacgagctgtgcaaaggaaaaaatatatgtgaaggaggtgaggaaatggacaac
aaattcggaatggagcagcaggagacggaggaggacattaccaaggagaagggtcacggc
ggctgtgggcgctaccagccacgtatccgacgctctggcctggagctgtatgccgagtgg
aagcacgtcaacgaggactcgcaggagaagaaaatcctcctgagtcccgagcgcatacac
gagatcttcaagcgcatctcagatgaagaggacgtcatcttgggcatggaacccaagttc
gcccggcccgaatggatgattgtgactgtgttgcctgtgcctccactggctgtgaggcct
gctgtagtcatgcagggatccgctcgcaaccaggacgacttgacccacaagctggctgat
attgttaagatcaacaaccaactgagacgaaacgagcagagcggagccgcagctcacgtc
atcgctgaggatgtgaagctgcttcagtttcatgtagccacaatggtggacaatgaattg
ccaggcctgccacgggcaatgcaaaaatctggccgccctctcaaatccataaaacaacgt
ttaaaggggaaggagggtcgcgtccgaggtaacctcatgggcaagcgtgtggacttctcc
gcccgaactgtcatcaccccagaccccaatctgcaaatcgaccaagtgggcgtaccgcga
tccatcgcggccaatatgaccttcccggaaattgtcacaccctttaacatcgacagactg
caagagttggtacgaagaggcaacagccagtacccaggagccaaatacatcgtccgtgac
aatggagacagaattgacctgcgcttccatcccaagccaagtgacctccatctgcagatt
ggttacaaggtggagagacacatgtgtgatggggacatcattatcttcaaccgacagcct
acactacataaaatgtccatgatggggcacagggtgcggattctgccctggtccacgttt
cgactcaacctcagtgtcaccaccccatacaatgctgactttgacggggatgagatgaac
ctccacctgcctcagtcccttgagacgagggcggagattcaggagctggccatggtgccg
cgtatgattgttacaccccagtccaaccggcccgtcatgggtatcgtgcaggacaccctc
accgctgtgcgcaaattcaccaagagagacgtcttcttagaacggggggaagtcatgaac
ctcctcatgttcctctccacctgggacgggaaaatgcctcagccggccatcatcaagcca
cgtcctctgtggacgggcaagcagatcttcagcctcatcattcccggacacatcaacgtc
atccgcacacacagcacccacccggatgacgaagacagcggtccttacaaacacatctca
cccggcgacaccaaggtcatagtggagaatggggagttgatcatgggcatcctgtgcaag
aagtctctcgggacctcagccggttccctggtccacatctcctacctggagatgggccac
gacgtcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggtgactccattgctgatgccaaaacttaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgactcccggtaacacgctgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctctgcacagaagtctctgtcagaa
tacaacaacttcaagtccatggtggtggccgggtccaagggttcaaagattaacatctca
caggttattgctgtggtggggcaacagaacgtggagggtaaaagaatcccctttggcttc
aagcaccgcacgctgcctcacttcattaaagatgactacggtcctgagagcagaggcttt
gtggagaactcctacctggctggcttgactccaaccgagttcttcttccacgccatggga
ggtcgagagggtctgatcgacacagctgtgaagactgctgagacaggttacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggtccagctgcgctacggcgaggacggcctggcaggagagaatgtggag
ttccaaaatctggcaacgctcaaaccctcacacaaggcctttgagaagaagttcagattc
gactgcaccaacgagcgcgcactgaggcggatgctgcaagaggacgtggtcaaggacgtt
ctgaccaatgcccacgtgcagagttccctggagagggagtacgacaagatgaaggaggac
agggatatcctccgagccattttccccactggggacagtaaggtggtgctgccatgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcattaacgctcggaccccaaca
gacctgaatcccctaagggtggtcgagggcgttcaggagttgagcaagaagctggtgatt
gtgaacggcgaagacccgctaagcagacaggcccagcagaacgccactctgctcttcaac
atccacctgcgctccacgctctgctccaggcgcatgacggaggagttccgtctctccacc
gaggccttcgactggctgctgggagagatcgagaccaagttcaaccagtccattgcccac
cctggtgaaatggtcggcgctctggctgctcagtcgctgggagagccggccactcagatg
accctgaacactttccactacgccggtgtgtcggccaagaacgtaacgctcggtgtgcct
cgtctcaaggagttgatcaacatctccaagaggcccaagacgccctcgctgactgttttc
ctgctgggccaggcagcacgtgacgccgagagggccaaagacatcctctgtcgactggag
cacaccacactgagaaaagtaacagccaacactgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaatgtctactacgagatgcccgacttt
gatgtgacgcgcatttcaccgtggctgttgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaagctgactatggagcagattgcagagaagattaacaccggttttggagacgat
ctgaactgtatcttcaatgatgacaacgccgagaagctcgttctgcgaatcagaatcatg
aacagcgatgagaacaagttccaaggcgacgaggaggtggtggacaaaatggacgacgac
gtgttcttgagatgcatcgagtccaacatgctgacggacatgacgctacagggcatcgag
cagatcagcaaggtgtacatgcacttgccgcagacggacaataagaagaagatcatcatc
acagaggacggcgagttcaaggccctgcaggagtggatccttgagacagacggagtgagt
ctcatgagagtgctcagcgagaaggacgtggatcccgtcagaaccacctccaacgacatt
gtggagatcttcacggtcctgggaattgaggctgtgcgaaaggctctggagagggagttg
taccacgtcatctccttcgacggttcctacgtcaactaccgccacttggcgctgctctgt
gacaccatgacatgccgtggtcacctgatggccatcacacgtcacggcatcaaccgtcaa
gacacgggcccactcatgaagtgttccttcgaggagacggtggatgtgttgatggaggca
tcgtcccacggtgaaagtgaccccatgaagggcgtgtcggagaacatcatgctcggccag
ctcgccccggccggtacaggctgctttgatttactgttggatgcggagaagtgtaaatac
ggcatggagatccctacaaacatacctggcatcagcgtggctggacccaccggaatgttc
tttggcaccgtgccgagccccatgagtggcatgtcacccgccatgacaccgtggaacact
ggagccacgccggcctacggcgcatggtctccaagcatcggaagcggcatgacccccgga
gcagcaggtttctctcccagtgcagcatcagacgcaagcggcttctcgccgggctactcc
ccagcctggtccccgactcctgggtctccaggatctccgggacctgccagcccgtacatc
ccgtctccaggtggagccatgtcacccaactactcacccacctccccggcctacgagcct
cgctcccctggaggctacacccctcagagccccggctactccccaacatcgccgtcctac
tcccctacctctccctcttattcccccacaagccccaactacagcccgacgtctccttcc
tactctcccacttcgcccagctactccccaacgtctccttcctattcgcccacatctcct
tcttattcccccacctccccgtcctactcccccacctccccttcctactcccccacctcc
ccttcctactcccccacctccccgtcctactctccgacctcgccgagctacagcccgacg
tcgcccagttactctcccacctcgccctcctactcacccacctcgccttcatattctccc
acgtctccgtcttactctcccacctccccgtcatattcccccacctctccttcctactcg
ccgaccagtccgagctacagccccacatcaccaaactacactcccacctctcccagttac
tcccccacctccccctcctactccccaacgtctccctcttactctccaacctcccccaac
tacaccccgaccagccccaactactctcccacctctccgtcgtactccccgacatctccc
tcttactccccgtccagtccacgctacaccccccagtcacccacctacacgcccagctcg
ccctcatacagccccagctcgccctcctactccccaacctcccccaaatacaccccgact
tccccctcatacagcccaagctccccggagtacactcccacctcgcccaagtactccccc
acatctccaaagtactccccaacgtcaccgaagtattcccccacttctcccacctactcc
ccaacaacacccaaatacagccccacctctcccacctactcccccacctcccccacctac
acccccaccagccccaaatactcccccacctccccgacctactccccgacctcacccaag
tattcacccacatctcctacgtactcgccaactagtccgaaaggctccacgtacagcccc
acctcccctggatacagccccacctcacccacctacagcccggccatcagccccgacgac
agcgacgaggagaacaactga
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integrated database retrieval system
