Scophthalmus maximus (turbot): 118319611
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Entry
118319611 CDS
T09850
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
smau
Scophthalmus maximus (turbot)
Pathway
smau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118319611 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smau03019
]
118319611 (clp1)
Enzymes [BR:
smau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
118319611 (clp1)
Messenger RNA biogenesis [BR:
smau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118319611 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
118319611
NCBI-ProteinID:
XP_035506018
EnsemblRapid:
ENSSMAG00025014882
LinkDB
All DBs
Position
9:13941088..13944518
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AA seq
476 aa
AA seq
DB search
MSGVSDHFIILSLSGDLLDDSWFGQCSTHDFTVSVMATEGVENTSEDAPAAGKVGARFDL
EKETELRFEVEAGEAAEQVELELLTGMAEVFGSELNRNKKYVFGPGSKIAVFTWQGCSVN
LYGKPEVAYVSKETPMLLYLNTHAALEQMRKQAERDNERGPRVMVVGPTDVGKSTVCRLL
LSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIERPADVEEGFSVQAPLVYHFGSTTPG
TNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIINTCGWVKGSGYQALVHCASAFQVDVV
LVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERSKECRRDTRDEKIREYFYGFRGVSYY
PFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQLKLVPVTPGRDLTYHVLSVSSAED
GEEGARKGIVESPVCGFIVVTNVDTQAQVMKVLSPAPRPLPRHTLLIMDIRFMDMK
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagtctctgatcacttcattatcctgtcgctcagtggggatcttttagatgac
tcttggtttggtcaatgttcaacacatgacttcactgtctcagtcatggcaacagagggt
gtggaaaatacgagcgaagatgctccggcagctgggaaggtcggtgccaggtttgacctg
gagaaagagaccgaacttaggtttgaggtggaggctggagaggctgcagagcaggttgag
ctggagctcctcacgggaatggctgaggtgtttggctcagagctgaaccgcaacaagaag
tatgtattcggaccaggctctaagatcgccgttttcacctggcaaggctgcagtgtgaac
ctttatggaaagccagaggtggcttatgtgtccaaagagactcccatgcttctctacctg
aacacgcatgctgccctggaacagatgagaaaacaagcagagcgggataatgagaggggt
ccgagggtgatggtggtcggacccacagatgtggggaagtcaacagtgtgtcggttgcta
ttaagctatgctgtaagggtgggcaggaggccaacgctagtggaactggacgtaggacag
agtggggtgtccgtacctgggacagtgtcggcactgtgcattgagcgtccggcagacgtg
gaggagggtttctcagtccaggctcctttggtctaccactttggctctaccacaccaggg
accaacatcaaactttacaacaagctgacgtcatgcttggccgaggtgttttcccagcgc
tgtgaggtgaacaggaaggccagcgtgggaggctgtatcatcaacacctgtggctgggtg
aagggctctggataccaggctctggtccattgtgcctctgcctttcaggtggatgtggtg
ctggtgctggatcatgagcggctgtacaatgaactcaaacgagacctccctcactttgtg
cgggttgtgctcctaccgaagtccgggggggtggtggaacgctcaaaggagtgtaggcgg
gatactcgggatgagaagatccgcgagtatttctacggcttccgtggcgtgtcatactac
cctttttcctacgaggtgcgtttctcagatgtccgtatctataagatcggggcaccatcc
atcccagattcatgcctgcctctgggaatgtctcaagatgacacgcagttgaagctggtg
cctgtgacacctgggagagacctcacataccatgtgctgagcgtgagcagtgctgaggac
ggagaggaaggggctagaaagggcatagtggagagccctgtgtgtggcttcattgtggtg
actaatgtggacacgcaagcacaggtaatgaaagtgctgtccccagcacccagaccactg
cccagacacactctgcttatcatggatattcgcttcatggacatgaaatga
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integrated database retrieval system
