Silurus meridionalis (southern catfish): 124380598
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Entry
124380598 CDS
T08004
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04020
Calcium signaling pathway
smeo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
124380598 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124380598 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124380598 (grin1b)
Ion channels [BR:
smeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
124380598 (grin1b)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
SIP
DUF6724
NYN
DUF3663
Motif
Other DBs
NCBI-GeneID:
124380598
NCBI-ProteinID:
XP_046697696
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Position
27:complement(14085488..14119511)
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AA seq
937 aa
AA seq
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MRLVLFAFLVSCSCARGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANNIYGKDKFKMNAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAQVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKSKNRNYENLDQLSYDNKRGPKAEKVLLFSQDTNLTALLQEARELEARVIILSA
SEDEAAAIYKAARQLNMTGSGYVWLVGEREMSGKALSEAPDGLLGLQLINGKNESAHIYD
AVAVVAQSIQELFEKENITEPPKGCVGNTNIWKTGPLFKRVLMSSKYPDGLTGRVEFNDD
GDRRFAHYSILNYQKTRLVQVGVYNGSQVMMNTQRKIIWPGGDTEKPRGYQMSTRLKIVT
IHQEPFVYVKPTLRDGTCKEEYTVNGVLIKKVICTGPNETIPGRPIVPQCCYGFCIDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDGKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
VAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKSGRAEPEPKKKASFRSIS
TNLASNIKRRRSSKDTPYPTDITGQLNLSDPSVSTVV
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctggttctcttcgcctttctcgtgtcctgctcgtgtgcacggggcggctgcgag
cccaagatcgtcaacatcggcgccgtgttgagccaaaagcggtacgaacaggtgttcaag
gacgcggtgacccaggccaacaacatctatggcaaagacaagttcaagatgaacgcgatc
tccgtcacgcataaacccaacgccattcagatggccctgtccgtgtgtgaagacctcatc
tcaaaccaggtctatgccattttggtgagccatcctcctcagtctaatgaccatctaacc
ccaacaccagtgtcctacacagcaggattctatcgcatacctgtagtgggattgaccact
cgcatgtccatctattcagacaagagcatccacctgtcattcttgcgcacggtgcctccg
tactcccaccaggcccaggtgtggtttgacatgatgcgcgagtttcgctggaatcacatc
atcctgatcgtgagcgatgaccatgagggtcgggcagcgcagaagaggctggaaacactc
ctggaggagagagagacgaagagtaaaaacaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggcagagaaagtgctcttgttcagccaagacacaaat
ctgacagcactgctacaagaggccagagagctggaggccagagtcatcatcctgtctgcc
agtgaggacgaggcagcagccatttacaaagcagctcgccagctgaatatgaccggctcg
ggatacgtgtggctggtgggagaaagggagatgtctggtaaagctctaagtgaagctcca
gatggcttgcttggcctccagctgatcaacggcaagaacgagtctgcgcatatctacgat
gcagtggcagtagtggcccagtccattcaggagctctttgagaaggaaaacatcacagag
cctccaaaaggctgcgtgggcaacacgaacatctggaagactggcccgctcttcaaacga
gtattgatgtcatccaagtatccagatggccttacaggccgcgtggagtttaatgatgac
ggagacaggaggttcgcccactacagcatcctcaactaccagaagacccggttggtccaa
gttggtgtctacaacggctcacaagtcatgatgaacacgcaaagaaagatcatttggcct
ggaggagacactgagaagccaagaggatatcagatgtcaacacgattaaagattgtcacc
attcatcaagagccatttgtgtacgtgaaacctacgctgcgagacgggacttgtaaagag
gaatacaccgtgaacggagtcctgatcaaaaaagtgatctgcactgggcccaatgagaca
attcctggtcgtcccatagtgcctcagtgctgctatggattttgcattgacctcttgatc
aagctcgcaatgacaatgaacttcacctacgaggttcacctagttgctgatggcaaattt
ggcacccaggaacgtgtaaacaacagcaataagaaggagtggaatggcatgatgggagag
ctgctgggtggcctggcagacatgattgtggctccacttaccatcaataacgagcgagcc
caatacatcgagttctccaaaccatttaagtaccaggggctcaccatccttgtcaaaaag
gaaatacctcgcagtacgctggactcattcatgcagccctttcagagcactctgtggtta
ctggtgggtctttcggtccatgttgtggcggtgatgctctacctgttagaccgtttcagc
ccatttggaaggtttaaagtgaacagtgaagaagaagaagaggatgccctcaccttatcc
tctgccatgtggttctcttggggggtacttctgaactctggtattggagaaggtgcccca
cggagcttttcggcaaggattttaggtatggtgtgggctggttttgctatgattatagtt
gcatcttatactgcaaatttggcagccttcctagtgttggatcggcctgaggagcgcatt
accggcatcaacgaccctaggctgcgaaacccatcagataagttcatctacgccacggtg
aagcagagctctgtggacatttacttccggcgtcaagttgagctgagcaccatgtaccgc
cacatggaaaagcacaactatgaaagtgccgctgaggccatccaggctgtgcgagacggc
aaactccatgcttttatctgggattcagctgtgttggagtttgaagcctcgcagaaatgc
gacctggtcactacaggagagttgttcttccgttcaggctttggaatcggcatgcgtaaa
gacagtccttggaagcagaatgtttccctggccattctcagctctcatgagaatgggttt
atggaggacctggataaaacctgggtgagataccaggagtgtgactccaggagcaatgcc
ccagccactctcacctttgagaatatggcaggcgtgttcatgttggtggctggtggcatc
gtcgccgggatcttcctcatcttcatcgagattgcatacaaacgacacaaggatgctcgc
aggaagcagatgcagttggcctttgcagcggttaatgtctggaggaagaacctgcaggat
aggaaaagtggtagagcagagcctgagcccaaaaagaaagcctcttttaggtccatcagt
accaacctggcctccaacatcaagagacgtaggtcctccaaagacacgccatatcctacg
gacatcaccggccagctcaacctgtccgacccctctgtcagcacggtggtgtga
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