Silurus meridionalis (southern catfish): 124384169
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Entry
124384169 CDS
T08004
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smeo03016
]
124384169 (cdkal1)
Enzymes [BR:
smeo01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
124384169 (cdkal1)
Transfer RNA biogenesis [BR:
smeo03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
124384169 (cdkal1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
124384169
NCBI-ProteinID:
XP_046702758
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Position
4:complement(15174375..15391829)
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AA seq
562 aa
AA seq
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MSSACASVIDDIEDMVSSSDSAPLQLQRSSGRQSVIPRVRKRKNVAANEELQVDSVIPGT
QKVWLRTWGCSHNSSDGEYMAGQLAASGYKMTDDPSDADVWLLNSCTVKNPAEDHFRNNI
KKAQEQNKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGLKK
DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERAR
QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWELVKEIPDGCMLRLGMTNPPYILEHLE
EMAKILSHPRVYAFLHVPVQSASDSVLMDMKREYCCDDFTHVVDFLKDRVPGITIATDII
CGFPGETDDDFKLTMELVRKYRFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSAL
FHSYNPYDHKVGERQSVLVTEESFDAQYYVAHNKFYEQVLVPKKPEFKGKMIEVDIFEAG
KHFLRGQPLEDSTVITPSINQPLKKGEISGLSQELKGASQNGGPAPLQLTCSSWNLDGQG
LKLSVGLALLAIVVLLIFEKLQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctgcctgtgcctctgtaattgatgatattgaggacatggtgtcctccagcgat
tcggctcctttacagcttcagcgctccagcggcagacagtccgtcattccccgagtgaga
aaacgcaaaaacgtcgcagccaacgaggagctgcaggtggacagtgtgattcctggcaca
cagaaagtgtggttaaggacgtggggctgctcacataacagctcagacggagaatacatg
gccggacaattggctgcaagcggctataagatgacagacgacccgtccgatgctgatgtt
tggctgctcaacagctgcactgtcaaaaacccagctgaagatcacttcaggaacaacatc
aaaaaggctcaggagcaaaataagaaggtggtggttgcaggatgtgttcctcaggctcag
cctaggatggactacctcaagggcctgagcattatcggggtccagcagatcgatcgtgtg
gtggaggtggtggatgaagcagtgaaaggtcactctgtacgtctgctgggtctaaagaaa
gataatgggaagcggctcggcggcgctcgattggatttgccgaagattaggaagaatccg
ctgattgaaatcatttccatcaatacaggatgcttgaacgcttgcacgtattgcaaaacc
aaacacgcgcgaggagacctggccagctaccctatcgaagaactggtggaacgagccaga
cagtccttccaggagggagtgtgtgaaatctggctgacgagcgaggacacgggggcttac
gggagggacatcggtacggatctccccacactgctatgggagctggtgaaggagatccct
gatggctgcatgctccgcctgggcatgaccaacccaccctacatccttgagcacctggag
gaaatggcaaagatcctgagtcacccgcgagtgtacgccttcctgcacgtccctgtccag
tcagcgtctgacagtgtgttgatggacatgaagagagagtactgctgtgatgacttcaca
cacgttgtcgactttctgaaggacagggttccaggcattaccatcgccactgacatcatt
tgtggctttccgggagagacggacgacgacttcaagctgacgatggaactggtgagaaag
taccgcttcccaagccttttcatcaaccagttctacccacgacccggaactcccgcagcc
aagatggagcaggtcccggctcatgtgaaaaaacaaagaaccaaggagttgtctgcgttg
ttccactcatataacccttatgaccataaggttggagagaggcagagcgtgttggtcaca
gaggaatcatttgacgctcagtactatgtcgcccacaacaaattctacgagcaggttcta
gttcccaaaaagccagagtttaaaggaaaaatgatagaggtagacatcttcgaagcaggg
aagcacttcctccggggtcagccgctagaggactccacagttatcacgccatccatcaac
caaccattgaagaagggagaaatctccggcctcagccaggaactgaaaggtgcgagtcag
aacggtggccctgcccccctgcaattgacctgttcctcatggaacctggatggccaagga
ctaaaactctcagtaggattggctctgctggctattgtagtgcttttaatctttgagaaa
cttcagtga
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