Silurus meridionalis (southern catfish): 124389067
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Entry
124389067 CDS
T08004
Symbol
prdm9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00310
Lysine degradation
smeo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
124389067 (prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124389067 (prdm9)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124389067 (prdm9)
Enzymes [BR:
smeo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
124389067 (prdm9)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
124389067 (prdm9)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
124389067 (prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
124389067 (prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
PRDM2_PR
zf-H2C2_2
zf-C2H2_4
SET
zf-C2H2_3rep
Motif
Other DBs
NCBI-GeneID:
124389067
NCBI-ProteinID:
XP_046710250
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All DBs
Position
7:complement(3373868..3385615)
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AA seq
863 aa
AA seq
DB search
MTDSPGLPSGEDQNLEIQGSVTVCNIGTEESQEENAFNDKHFYCETCHKLFLDQCDVHGP
PLFTYDSPTPMGVPQRALLTLPQGLVIGRSTTPGAGLGVFNQGQIIPLGMHFGPFDGEIS
STENALESAYSWIICRGSDHYDYIDAERDTHSNWLRYVVCSRTENEQNLVAFQQAGRILF
RSCRSIYPGQELKVWYAEEYAHSLSTTWDKIWDKKCTFTGRNSEEASQLCLCPYCQYSFP
AAFYLHRHVRRSHPDEYPHLLEAQTLETCDHTPVMNLDHCLLASDAPPQSHMQQMTKSFQ
NEFPTLSGQTEQSNPTDPPHTNSSNLMNKTDQSDGSGEEVSGNKCGECGRTFLRSCHLKR
HQRTIHSKEKPYCCSHCRKCFSQATGLKRHQQTHQGEKEGTTGTEQTEKGDSVYSCTKCS
FSFITKLNLYRHLKRHHHEEYLKLVENESNAESSQHENSSNKHDPPYEPPVKLRRSALNP
NRAGNQKRKVSTGRPRGRPPKIKKKHSQKPVRDSAQEDNQNKSLEVDQTATENESTAAPQ
WTNEGSKEPKEMSQETSSHVCGECLRTFSHLHLLKSHECIQQGDGPHGCSHCELYFNRLC
NLRRHERTIHAKERPYCCTLCLKSFTQSSGLKRHQESHSRHRAHRQSTALANATIYPCSH
CPFSFTGERYLYKHIRRHHPEMTTKYSSFNEGDIPSKDHSCTQCSKTFQTIRGFKNHACF
RQGDQLYLCPDCGKAFSWFNSLKQHQRIHTGVKPYACSQCDKSFVHSGQLNVHMRTHTGE
KPFLCAECGESFRQSGDLRRHEQKHSGVRPCQCPDCGKSFSRPQSLRAHQQLHKGTKLFP
CTQCGKSFARRYHLTRHHQKMHS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgactgatagtccaggattgccatcgggggaagaccagaatttagaaatacagggttct
gtgactgtatgcaatataggaacagaagagagtcaggaagaaaatgctttcaacgacaag
catttttactgtgaaacctgccataaactgtttttagatcagtgtgatgttcatggacca
ccattgttcacctatgactctcccacacctatgggagttcctcagagggcacttctcact
cttccacaagggttagtcataggtagatcaacaactcctggggctggacttggtgtgttt
aaccagggacaaattattcctcttgggatgcattttgggccttttgatggggagatcagc
agcactgaaaatgccctggaaagtgcttactcatggattatatgcagagggagtgaccat
tatgattacattgacgcagagagggacactcattcaaattggttgaggtacgtggtttgc
tcacggactgagaatgagcaaaacttggtggcgtttcagcaggcagggcgcatcctgttc
cgctcttgccgctccatctatcctgggcaggaactgaaagtgtggtatgcagaggagtat
gctcatagtctcagcactacatgggataaaatctgggacaagaagtgcacatttacagga
agaaacagtgaagaagcgtcacagctttgtctttgcccctactgtcagtactctttccca
gcagctttttacctacacagacatgtcaggcgctcacacccagacgagtacccacatctc
ttggaagcccagactcttgagacttgtgaccatacaccagttatgaatttggatcattgc
ctacttgcttctgatgcaccacctcaatcccacatgcagcaaatgacaaaatcctttcag
aatgaatttccaacactcagtggccagactgagcaatcaaacccaactgatccaccacat
accaatagcagtaatttgatgaacaaaacagaccagagtgatggcagtggtgaagaggtg
tcagggaacaaatgtggcgaatgtgggcgaacatttttgcggtcatgccatttaaaaagg
catcagcgcacaattcactcaaaagagaagccttattgctgtagccactgcagaaaatgc
tttagtcaggcaacggggctgaagagacatcagcaaacccaccagggtgaaaaagaggga
acaacaggtacagagcaaacagagaaaggggattctgtctactcgtgtactaagtgttcc
ttctctttcataaccaaacttaatctctacagacatctcaaaagacatcaccatgaagag
tatttaaaattagttgagaatgagtctaatgcagagtcatcgcagcatgaaaactcatca
aacaaacacgatcctccttatgaaccaccagtcaagcttcgaaggtcagctttaaaccct
aacagggctggtaatcaaaagaggaaagtatctacaggtcgacctcgaggcagaccaccc
aaaataaaaaaaaaacacagccagaaaccagtcagggactctgctcaagaggacaatcag
aacaaaagtttagaggtggaccagactgctactgagaacgagagtacagcagccccacag
tggactaatgaaggcagcaaagagccaaaagaaatgtcacaagagacttcatcgcatgtt
tgtggcgagtgcctaagaaccttcagccacctccatcttttaaaaagccatgaatgcatt
cagcagggtgatggacctcatggctgctctcactgcgaactatattttaatcgcctgtgc
aacttgcggcgacacgaacgcaccatccatgccaaagagaggccatactgctgcacattg
tgccttaagtccttcacccagtcatctggtctgaagcgccatcaagaaagccactcacgc
cacagagcacatcgccaaagcacagcactggccaacgccactatttacccctgcagccac
tgccccttctcctttactggtgagcgttacctatacaaacacatccgccgccaccaccca
gagatgactacaaagtactcgagctttaatgagggcgatataccgtccaaggatcatagt
tgtactcaatgctccaagacctttcagacaattaggggtttcaagaatcatgcctgcttc
aggcaaggggaccagctgtacctttgtccagactgtggcaaggccttcagctggttcaac
agtttaaaacagcaccagcgtattcacacaggagtgaaaccttacgcatgctcacaatgt
gataagagttttgtgcactcgggacaactgaatgtccacatgcgcacgcacactggggag
aagccatttctttgtgctgagtgcggtgagagctttaggcagtcaggtgacctgagacgg
catgagcagaagcactcaggggtgcgaccgtgtcagtgcccagactgtggaaaaagtttt
agtcggccacagagtctcagggcccaccagcagcttcacaagggcaccaaactgtttcct
tgtacacagtgtggcaaaagctttgcccgtcgttatcaccttactcggcatcatcagaaa
atgcactcatga
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