Silurus meridionalis (southern catfish): 124397066
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Entry
124397066 CDS
T08004
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smeo01001
]
124397066 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
smeo04054
]
124397066 (ciita)
Enzymes [BR:
smeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
124397066 (ciita)
Protein kinases [BR:
smeo01001
]
Serine/threonine kinases: Other
TAF1 family
124397066 (ciita)
Pattern recognition receptors [BR:
smeo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
124397066 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
nSTAND3
DASH_Dad3
AAA_22
RsgA_GTPase
UPF0449
Motif
Other DBs
NCBI-GeneID:
124397066
NCBI-ProteinID:
XP_046722478
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All DBs
Position
14:22789491..22803578
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AA seq
1139 aa
AA seq
DB search
MVPFQEVLFEVRRVLQQVNPNLLPLLLTQFVEAQIFSAQYYQSLFFSEDLNDVDVDDLAR
RLALPVWEKWDASRVILSAALLENEPEIHDHENTMTSVDPVETIPDQLLDLIASIPIEEF
PFEEYLDSSYSEEVWNDIPDGSDDKFTLVCQTCDENPDVRKRKRGVVNERPKTKMPCPKR
RKKAPSSSEPPTEVKMAVQGGNFHVSGVPSFVHFPLRISTAASLMPPGAPAMQIIQTFNP
LSPLPGILPVGATYVLVSPQPLAPLPVTQIAPLSPVSGTVAPVELSMSIHPASSQSDSAS
RGQSPSQPAPVSPIKGKPPSKEYLPATQDIKKIPAISKNVQDFIVALKTHVREKCSVMEG
GMKMQSHYIDTPLVQRKLIIRTGKNANKCLEKELVVLSDSERKKAMVHRSHVFHNSNNKH
LITILGKAGMGKSTFIRRLALDWSTGGLQQFKFIFLLNCKVLNLTQGKFSLKSLLFQSSM
SPRCGDPEAVFKHLLAFPEDVLVVFDSFDDMKDLEGLLQSPATSSTEGNYSIRQLFSGLF
QKKILSGCTLLMATRPRDVLNQLLRKVDSILELCWFSAKDIEMYISNYFGEASEKEDVLR
KIQSQKYIFSLCSNPLLCRLTCFLSEHQQSNSLPSTLTDLYQRVLSQYLELNENLQGSKQ
DISQLCNTAWDGFKIQNSLLNQNQNKNLVDSELSSGILRTHGGCEETGNNQVTYFADLFV
QSLLSALLLVHSSELNDKMLLAHTTLHQRKRKPQGEWQDVLQRFVIGLLFQKNAPPACRD
FQSGTDLQAKRKAVEVHLENLKPGEMIPSRLLELFHCVYESRNIKLAKLLLKNLPDNLSF
CGAQLSPVDVYVVWHLLMHTKGLKRTFSMDLRDTCVPLSGLRELVALDCVASFRAPTMDT
INLWEDLHHSNDKLGLKNAIEKFTINPLKVLQVSHVENLAILGQIHNEKKLPLCEVETAL
EDGVPAVRHLQKLEYELNQQNNPEVFLQLVEILPALQSLHHLDLENNKIGDVEVERLAGA
LSSLSSLKLLNLSQNCIGDDGVRKLAEALTSLSSLQSLSLYGNVIGDGGAESLAYVLPLM
TSLLDLDVKYNKFTDVGAKRLSAALKNSPSVKSLQMWNDCIPYGVFEHLQIQDCRIKAL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctttccaagaggttctctttgaggtgcggagggttctccagcaggtgaaccca
aacctccttcctttgcttctaacccaatttgtggaggctcagatcttctcagctcagtac
tatcagagcttgtttttttccgaggacctgaacgacgtggatgtggacgatttggccaga
aggcttgctcttcctgtgtgggaaaaatgggatgccagtcgagtaatcctctctgcagcg
ctcctggagaacgagcctgagatccatgaccatgaaaacaccatgaccagtgtggatcca
gtggaaactatacctgatcagctactggacctgatcgcctccattccaattgaagaattt
ccgtttgaagaatatctcgattcatcttactcggaagaggtctggaacgatatcccagat
ggatcagatgataaattcacgctggtatgtcaaacatgtgatgagaatccagatgtgagg
aaaagaaagcgtggagtagtaaatgaaagaccaaagacgaagatgccttgccctaaacgt
agaaaaaaagccccctcgagctctgaaccccccactgaagtcaaaatggccgttcaggga
gggaatttccacgtctccggcgtgccctcgttcgtacacttccccttaaggatctccacc
gccgcctctctgatgccacctggtgcaccagcgatgcagatcatacaaacgttcaatcct
ctctctcctctgccaggcattcttccagtaggtgccacctatgtcctggtttcaccacaa
cctctcgctccattgccagtgactcagatcgcccctttgtctccggtcagtggaacagtg
gctcctgtagagctcagcatgtccattcatcccgcaagctcgcaatcggacagcgccagt
agggggcagtctccatcccaaccagctcctgtttcacccattaaaggcaaaccaccttcc
aaagagtatcttcctgcaactcaggacatcaagaagatcccagcgatatcaaagaacgtt
caagactttatcgtggccttaaagacgcacgtgagggaaaagtgcagtgtgatggaagga
ggaatgaagatgcagtctcactacatagacactccactggtgcagaggaagcttatcatc
aggactggcaagaatgcaaacaaatgcttagagaaggaactcgtggtgctcagcgactcc
gaacgaaagaaagccatggtgcacagaagccatgttttccacaactccaataacaagcac
ctgatcactattcttgggaaagctggcatgggaaagagcacgtttatccggcgtttagct
ttagactggtccaccggtggccttcagcagttcaagtttatcttcttgctcaattgcaag
gttctcaatctgactcaggggaagttcagtctgaagagtttactattccagtcatccatg
tctcctcggtgtggagatccggaggctgtcttcaaacaccttctcgcctttccagaggac
gttcttgtcgttttcgacagttttgatgacatgaaagaccttgaaggccttcttcaatcg
cccgctacctcatccacagaaggcaactacagtatcaggcagctgttttctggcttgttc
cagaaaaagattctctcgggttgcacgcttttgatggctacgcgcccgcgagacgttttg
aatcagctgcttcgtaaagtcgacagtatcttggagttatgttggttttctgcaaaggac
atagaaatgtacatttcaaactattttggggaggcatcagagaaagaggatgtgctgcga
aaaatccaaagccaaaaatacattttcagcttgtgctccaacccgctgctgtgtcgcctc
acgtgctttttatcggagcaccaacaaagcaacagtttgccatcgactctaacggattta
taccaaagagtcctcagtcagtatctagagctgaatgagaaccttcaaggatccaaacag
gacatcagtcagttgtgtaacactgcatgggacggatttaagattcaaaactccctgtta
aaccaaaatcagaacaaaaacctggtagattctgaactcagctctgggattctcaggaca
catggaggatgtgaagaaactggcaacaaccaggtcacttattttgccgatctttttgtt
cagagccttctaagtgccctgcttttggtacattccagtgagttgaatgataaaatgctg
ctggcacacaccacacttcaccaacggaaaagaaaacctcaaggagaatggcaagatgtt
ctgcaacggttcgtgataggattactgttccagaaaaacgccccgcctgcctgtagggat
ttccaaagtggtactgaccttcaggccaaaagaaaagcagtggaagtccatctggagaat
ctgaaaccaggcgagatgattcccagcaggttactggaactgtttcactgtgtgtacgaa
tcaagaaatatcaaactcgccaaacttctgctgaaaaaccttccagataatttgtcattt
tgtggagctcagctctctccggtggacgtctatgttgtttggcatcttctcatgcatacc
aaaggacttaagcgaacgttttctatggacttgagggacacgtgtgttcctctcagtggt
ctcagagagctggttgcattggactgtgtggcgtcattcagagctccaactatggacacc
attaacctctgggaggacctgcatcatagcaacgataaactgggtttaaaaaacgccatt
gaaaagtttactataaaccctctgaaggtgttgcaggtgtctcatgtggagaacttggcc
atcctgggacagatccacaacgagaagaagctgcctttatgcgaggtcgagacagctctg
gaggacggcgtcccagcggtgagacatctccaaaagctggagtacgagcttaaccagcag
aacaaccctgaggtgtttcttcagctggtggagatcttacctgctcttcagtctcttcat
cacctggatttggagaataataagatcggggatgtcgaggtggagcggttggccggagcg
ttgagctcgttatcatctctgaagctcctgaatctttctcagaactgtatcggggacgac
ggcgtgcggaaactggccgaagccctgacgtccctgtcctcgcttcagagcctcagtctg
tatggaaacgtgatcggggacggcggagctgagagcctggcgtacgttttaccgcttatg
acgtctctgctggacctggatgtgaagtacaacaagttcacagacgttggagccaaaagg
ctgagtgctgcattaaagaactcgccaagtgtgaagtctcttcaaatgtggaatgactgt
attccttatggtgtttttgagcatcttcagattcaagactgcaggataaaagctttataa
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