Silurus meridionalis (southern catfish): 124402348
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Entry
124402348 CDS
T08004
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00310
Lysine degradation
smeo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
124402348 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124402348 (prdm2b)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124402348 (prdm2b)
Enzymes [BR:
smeo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
124402348 (prdm2b)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
124402348 (prdm2b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
124402348 (prdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_4
zf-C2H2
zf-C2H2_6
zf-C2HE
Zap1_zf1
zf-C2HC_2
zf-C2H2_jaz
Motif
Other DBs
NCBI-GeneID:
124402348
NCBI-ProteinID:
XP_046731278
LinkDB
All DBs
Position
19:9901944..9910590
Genome browser
AA seq
1514 aa
AA seq
DB search
MRDSDKGINTEEKRPFGASDPAQEIAALQVFNTETRDISLFPVHTAVLDQKEREKSDKEL
QTPGILEHSAESQSEKKNEQHDPESTSGHPFNESSESPLHEVASVSSLVFQDLNAEVDPE
FEDDSQGGNHPCQYGEREFSTKQNLDHIKTHTIGNHQTLTFKCKYCSKLFGSQVGKRRHE
RRHENGSKGLKRLGSLAGTAFLSSPSGCNNSSISGSVTSPSPNIKSSQNSPTYPSTNAST
KDAGVEQNQSLVMEENGKSKELHPCKYCNKVFGTHTNMRRHQRRIHERHLMPKGVQRKGI
LLQDISSHKLQQAQSSVLQEGSPRNSPSLVYVPSVDSDEEGELEEVDVSKNISENLSLYI
DGKILSTATVSSCDVIEVDSSNQALFGLDTVILNSSQISHALQLETQPCHVKELSIIDQA
VPKRRTSTPPLLPTVETEPDTLSSTVSSPSSSSSQSPSLGGNSFSQPIDTVSFQKEKTIY
LSPKLKQLLQTKDSQKPTLALAAESRKLTTPHSVSTLPAAQGKFKRRTASPPTQKSSSVN
MESSAIETGDSFAPVVPKVESHCMSMSWNASSKEHIDCVSSSGKDWPVLVSGGSSCNQQP
LDLSGVIGKQGGSISKGANESVLDLSIHHKSLTDHKTKASILLQSHVKRKKPNTSMLEKV
LMNEYSGSVSAGEEGSLSLGSPDTHYSTTAVSPTSVCSNSEHHLCESVSPPSLTPVIMNP
SSPSSSSQASSTPPPPVLPTVPSPPPFAQFSDSAFPKLSPYSVYYMADEIPMFHNVKETC
FEMKNLDDKELNQTSNKQLPPTADALPQSPEDEKSNCNADSFSESETLLECSTSNSDLHL
INKTKHVISLYEKNVDSKVIQSSSFDNPFPQDHNIATDVCQNLQSCPVHLASNMDSHAFY
QKIVADSNVQLLCNDALVTDKIEDAVESTINNDGISSVAEKTPERANALEQDTFTKSFVC
NVCEEPFHSIKQLSKHIVEHGEEWPFKCEFCVQLFQNVAALLEHRSSLHGVGRIYCCSVC
AKEFAFLCNLQQHQSDLHPGQSCAHTTIENGKLRPQNYTDPAQVDIEKNPSNLTHYTTVD
VAPPDSCELFNCSSVKEESDGDEQEDPTEELYTTIKIMASEAGKPKCPDVRLGINQHYPS
FKPPPFPYHNRTPSSSVASATNFTTHNIPQTFSTAIRCTKCGNSFDNMPELHKHILACAN
ASDKRRYTPKKNPIPLRQIVNQPQNGVSPLPAAIVGQNPCRRMGQPKRLNFTQEVPIKIK
MSALNKKKNQLVQKAISQKNKAATSIKKTSILGEEHVVQACPYCSREFTYAASLAKHIAC
SCPQKPVAKKKKGALMPQDKNMKLRSRVTDSEIKEEGNCSLAVKSLGKTRTRSLELLEGD
ITSGSNGKTGTPQIRVKRPALNKNQSAPKTKKGRKSKSQPSILPSFLALGSQPAAKIQRG
RKDMKKEAETKPQVQPIKEKRFPKRMRERVGGPVTRSLQMATAAPPGEVETEDVPISEPV
HGEHKVLRQESSLS
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgactcagataaaggaataaatacagaggaaaagagaccctttggggcttcagat
ccagctcaagagattgcagctttacaagtattcaacacagagaccagggatatttctctg
tttcctgttcatactgcagtgttggatcagaaggagagagagaagtcggataaagaactt
cagacacctgggatccttgagcactctgctgagtcacagtcagaaaagaagaatgaacag
catgacccagaatcaacttctggccaccctttcaatgagagttctgagagtccattgcat
gaagtagcatcagtgtcttctttggtttttcaagacctgaatgcagaggtggaccctgaa
tttgaggatgattcacaaggtggcaaccatccttgtcagtacggtgaacgtgagttttcc
accaaacaaaacctggatcatattaagactcacactatcggaaaccatcagaccctcacc
tttaaatgcaaatactgctccaagctatttggttctcaggtaggcaagagaaggcatgaa
agacgacatgaaaatgggagtaaaggcctaaaaaggcttgggtcgcttgctggaacagcc
tttctttccagtccttctgggtgtaataactcttctatttcaggtagtgtcacatctcca
agccccaacattaaaagttctcaaaacagtcctacttacccaagcacaaatgcatcaact
aaagatgcaggagttgagcaaaaccagtctctagtcatggaagaaaatgggaaatcgaaa
gaactgcacccgtgtaaatattgcaacaaggtttttggcactcacacaaacatgcgcaga
caccagcgcagaattcatgaacgtcatcttatgccaaaaggagttcagaggaagggaata
cttttgcaggatatttcatctcataaactacaacaagctcagagttcagtacttcaggag
ggatcacctcgtaatagcccatcacttgtctatgtgcctagcgtagactcagatgaagaa
ggagaactagaggaggttgatgtttccaaaaacatttcggagaatctcagcctttacata
gatggaaagatcttatccactgccacagtcagcagctgtgatgttatagaagtggattca
agcaaccaagcattattcggtcttgatacagtcattttgaattctagccaaataagtcat
gctctccaattagaaacacagccttgccatgtaaaagagctttcgattattgatcaggct
gtccccaaaagaagaacttctacaccaccgctccttcccactgtggaaacagaacctgat
accctgtcatctactgtatcttcaccttcttcttcttcctcacaatcaccttctttggga
ggtaacagtttctcacagcccatagacacagtgtcctttcaaaaggagaaaactatttat
ctttctccaaaattaaaacagcttctgcaaaccaaggacagtcagaaaccaacccttgct
ttagctgcagaaagccgcaaattgactactccacattccgtatccacattgccagctgct
caaggaaaatttaaaagacggactgcttctcctcctacacaaaagagctcatcggtaaac
atggagagctcagctattgaaacaggagattcgtttgcccctgtggtaccaaaggttgaa
agtcattgcatgagcatgtcctggaatgcatctagcaaagagcacattgactgcgtgagt
tcttctggaaaggactggccagtcttggtaagtggaggcagttcttgcaatcagcagcct
cttgacctttctggtgttattggtaaacaaggtggcagcattagcaaaggagctaatgag
tctgtgctggatctaagcatacaccataagagcttgactgaccacaaaacaaaagctagt
atattgctacagtcgcatgtcaagagaaagaagcccaatactagcatgttggagaaagta
ttgatgaatgagtattctggttcagtctcagctggagaggaaggctctcttagtcttgga
agcccagacactcactatagcaccactgctgtgtctccaaccagtgtgtgttcaaactct
gaacaccatctttgtgaatctgtctctccaccctctctgactcctgtgattatgaacccc
tcttccccctcatcctctagccaggcatcctcaacacctccccctccagttctacccaca
gtcccttcacctccacctttcgcacagttttcagattctgcttttcccaaactttctccc
tactctgtttattatatggcagatgaaattccaatgttccataatgtgaaagaaacatgc
tttgaaatgaaaaatctggatgataaagagctcaaccaaacttcaaacaaacagttacct
cctacagctgatgcactgcctcaaagtcctgaggatgaaaaaagtaattgtaatgcagat
tccttttccgaatctgaaacactacttgagtgctcaacctcaaattctgatttacatttg
ataaacaaaacaaagcatgttatttctttgtatgaaaagaatgttgactccaaagttatt
cagagtagttcctttgataatcctttccctcaagaccacaatattgcaactgatgtatgc
caaaatctacaatcctgtcctgtgcacttagcttcaaacatggactcgcatgcattctat
caaaaaatagtggcagattcaaatgtacagttgttatgtaatgatgcactagttactgat
aagattgaagatgcagttgaaagcacaatcaacaatgatggaatttcttcagtggcagaa
aagacaccagagagagcaaatgctttggaacaggacacatttacaaaaagttttgtatgt
aatgtctgtgaggaaccttttcactctataaaacaacttagtaaacatatcgtagaacat
ggggaggaatggccttttaagtgcgagttttgtgtgcaactatttcaaaatgttgcagct
cttttagagcatcgctcctctctccatggagttgggagaatttactgttgctcagtctgt
gccaaagagtttgctttcctctgcaaccttcagcaacaccagagtgacctgcatcctggt
cagtcatgtgctcacaccacgattgaaaatggaaagctcaggcctcagaattacactgat
cctgctcaggtggatattgagaaaaatccttcaaatttaacccattacacaaccgtagat
gttgcccctccggactcttgtgaactatttaactgtagtagtgttaaagaggaaagtgat
ggagatgaacaagaggaccccacagaagagctttacactacaataaaaattatggcttct
gaggccggtaagccaaaatgcccagatgtccgccttggcattaatcaacactaccccagt
tttaaacctcccccatttccctatcacaatcgaacaccttctagctctgtagcctctgca
actaactttaccacccacaacataccccagacattcagcacagcaatcaggtgcaccaaa
tgtggcaacagctttgacaacatgcctgagctccacaaacatatcttagcatgtgctaat
gcaagtgataagagacggtacacccccaaaaaaaaccctattcctctcaggcagatagta
aatcagcctcagaatggtgtttcacctttaccagcagccattgtgggacagaatccttgt
cgtaggatgggccaacctaaaaggcttaattttactcaggaggtacctatcaaaataaaa
atgtctgccctgaataagaagaaaaaccagcttgtccagaaagctatatctcaaaagaac
aaagctgctacttctataaagaaaacctccattctgggtgaagagcatgttgtgcaagca
tgtccgtactgcagtcgagaatttacatatgctgctagccttgcaaagcacattgcatgc
agttgccctcagaaaccagttgctaagaaaaagaaaggagccctaatgcctcaagataaa
aacatgaaactccgaagtcgagtaacagactctgaaatcaaagaagaaggcaactgtagc
ctagctgtaaagtcactgggaaaaacaaggacccggagcttagagttgttagaaggtgat
attacatcaggtagcaatggtaaaacagggacccctcagatacgtgtcaagagaccagcc
ttgaacaaaaaccagtcagcccccaaaaccaaaaaaggcagaaagagcaagtctcaacct
tcaattctcccttcgtttctggcgcttgggtcacagccagctgcaaaaatacaacgtggt
aggaaagatatgaaaaaagaggctgagacaaaaccacaagtacaacctataaaagaaaag
cgtttcccgaagagaatgcgtgaaagagtaggtggcccagtgacacgcagtctgcagatg
gcaactgctgcaccacctggagaagtggagactgaagatgtgccaattagtgaacctgtt
catggagaacataaggtgctcagacaggaatccagtttaagttag
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integrated database retrieval system
