Salvia miltiorrhiza (redroot sage): 131001430
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Entry
131001430 CDS
T09291
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131001430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
131001430
Enzymes [BR:
smil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131001430
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
131001430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2635
Motif
Other DBs
NCBI-GeneID:
131001430
NCBI-ProteinID:
XP_057783814
LinkDB
All DBs
Position
1:complement(61473782..61483866)
Genome browser
AA seq
1685 aa
AA seq
DB search
MATEMVGSVRFGFMTDEEVRKQSLVKITNPNLLDILEKPIPGGLYDFAMGPVVDGSECKS
CGQQSYNCTGHCGHIELVSPAYNPLLVNTLNTLLNKACFHCFHFRSSKAEAENCVSQLKM
IQEGNIVAAKKLSLRRKMVDKKNVDWANIDDDADAEDSQGSRALHSGVVSDGESYHGHEK
KEAFWDSTLLTESMSVLNDFLKRKEKKCKNCKRSNPKITKPTFGWFHATGISSTQIRANA
ILSGRLDVTHSGGGEDRPSSEVLNASDHSWKDGSDTAEVHSYAASDSPQKPRKKGGKPKK
IQNLGLEAKAKDFSGPLLPSEVRDILRRLWENESELCSYICDIQHQHDEISKHMAGYSMF
FLETVLVPPIKFRPPAKGGDSVMEHPLTVLLGKVLQANIALGNAHMNNSESSRIISRWMD
LQQSINVLFDSKTANSQSQKDSMGICQYLEKKEGLFRQKMMGKRVNFACRSVISPDPYLA
VNEIGIPPYFALRLTYPERVTPWNAGKLRGAVVNGPDIHPGATTYVDSVSTVKLPKNKKM
RVAISRKLPSSRGVVTQSGKINEHEFEGKTVHRHLQDGDIVLVNRQPTLHKPSIMAHVVR
VLKGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTKGDTV
RGLIQDHIVAAVLITMKNTFFNRSEFSQLLYGSGVFAAGPGSHPGDRKVSVLDSEGLVES
VLPAVWKPEPLWTGKQVITALLNHITRGCAPCTVKNQGKIPKNYFASASYKNGEEDQEHN
AEHDLLIWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTLFLQFHGF
TCGLDDLIILPHFDLQRKEKLEGEDVGEEVHCDFVKFKPGQIGPEELQLEIEKVICSDRE
SSTATLDMKMKNKLTNRLTREGSQILKHLLTRGLLKPFPKNCISVMTTTGAKGSTVNFQQ
ISAYLGQQELEGKRVPRMVSGKTLPSFPPWDYTARAGGFITDRFLSGLRPQEYYFHCMAG
REGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDSDGSIVQFYYGEDGVDVHKTSF
LKNFKALQDNRETICQKFQNQRQFNSYISELPKGLEEEARRYIHEAQEKSSKKQILRRHK
GKKKERLLEKEKAFAEEQGFLELVKQKYLWSLAESGEPVGVIAAQSVGEPSTQMTLNTFH
LAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFADFRSKRDVVALVSKVKRVSVADL
VESMEVRLSIDPHKVSRTYKLKMKLKETEFVSSQDMKDTLETVFLYELEDAIENHIIFLS
KISGIKNFMSSSISGEADEDESGARSTEVDDDDDNDDDDDDKGDDLDSDAQKRKQQASDE
LDYGDGSDVDHGEDELSTDTEKRKSDVDLEDMDTSKDDGTDRSDKKEDMDSIQGGSTSGR
DLYSGKGFSSKKIKRAVKLEFKGLSYDAHFRFTDEPHILLAQLAQRTAKKVFIKRTGKMS
QCRLVQYDPDEKTVIWNDTKKPKMGENRPEAGADDALYWAMKASGVDFKSLWEMHEDLDL
SRLYSNNVHAVLNTYGVEAARATLIREVKQVFDIYGVKIDYRHLSLIADYMTHTGGYRPM
SRHGSISESLSPFLKMSFETASKFIVEAASLGLKDDLETPSSRICLGLPVKVGTGCFDLM
QKLDS
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgagatggtgggttcggttcgttttgggtttatgacggatgaagaagtgagg
aaacagagtttagtgaaaatcacaaatcctaatttgctggatatattggagaagccaatt
cctggcggactatatgattttgctatgggacctgttgttgacggctctgagtgtaaatca
tgcggccaacaatcgtataattgcaccggtcattgtggccacattgagcttgtttcgcca
gcttacaatccgttgcttgtgaatacattgaacactcttctcaataaagcatgttttcat
tgttttcattttcgatcaagcaaggcggaggccgaaaactgtgtttctcaattgaaaatg
atacaagagggcaacattgttgcggcaaagaagctgagtttgcgacggaagatggtagac
aagaaaaatgtggattgggccaatatagatgatgatgctgatgcagaggatagtcaaggg
agtcgtgcattgcattctggagtcgtttctgatggtgaaagttaccacgggcatgagaag
aaggaggcattttgggattctaccctgctgactgaatctatgtcagttttgaatgatttc
ttgaagagaaaagagaagaagtgcaagaactgcaaacgctcgaacccaaagatcaccaag
ccaacgtttggatggtttcatgcgacaggaatttccagtacccaaattagagcgaatgcc
atactaagcggcaggttggatgtgacacacagcggaggaggtgaggataggccttcttct
gaggtgttaaatgctagtgatcattcatggaaggatggatctgatacagctgaagtccat
tcatatgctgcctctgatagcccccaaaagccccgcaaaaaaggtggaaagccaaaaaaa
attcaaaatctggggttggaggcaaaagctaaagatttttcaggacctctcttaccttca
gaggttagagatattctgagacgtttgtgggaaaatgaatctgagctttgctcatatata
tgtgatattcagcaccagcacgatgaaatttctaaacatatggcaggctattcaatgttt
tttctagagactgttcttgtacctcctattaaattccgacctccagccaaaggtggcgat
tcagtgatggagcatccactcactgttctattagggaaggtgctgcaggcaaatattgct
ttaggaaatgctcatatgaataattctgaaagctcaaggattattagtcgctggatggat
cttcagcaatctatcaatgttttatttgatagcaaaactgcaaatagtcaatctcaaaaa
gattccatgggaatttgtcagtaccttgaaaagaaagagggtttattccgtcagaagatg
atgggcaaaagggtcaattttgcttgccggtctgtcatatctccagatccttacttggca
gttaatgaaattggaattcctccatactttgctttgagattgacatatccagagagagtg
actccttggaatgctggaaaattgaggggcgctgtcgttaatgggcctgatatccatcct
ggagctacaacttatgtggatagtgtatccactgtaaaactaccaaaaaacaaaaagatg
cgtgtagcaatatctagaaaattaccctcttcacggggtgtcgtgacccaatcggggaag
atcaatgaacatgagtttgagggcaagactgtccatcgccacttgcaggatggggatatt
gtgcttgtaaatcgtcagcccacactccacaagccgagtataatggctcatgtagttcgt
gtattgaaaggagaaagaaccctccgcatgcattatgcaaattgcagctcatacaacgca
gattttgatggtgatgaaattaatgtgcattttcctcaagatgaaatttctcgtgcagaa
gcttacaacattgttaatgctaatgaacagtatattgttccaacaaagggtgacactgtg
agaggcttgattcaggatcatattgtagctgctgtgcttattacaatgaagaatacattt
tttaatcggagcgaatttagtcagctgctttatgggtctggtgtgtttgcagctgggccg
ggttcgcatccaggagaccggaaagtttcagtattagattctgaaggtctggtggaatct
gtcttgcctgcagtatggaaaccagagcctctttggactgggaaacaggtcattacagca
ttactgaatcatatcacacgaggttgcgcaccttgtactgttaaaaatcaagggaaaatc
ccaaagaactattttgctagcgccagttacaaaaatggagaggaagatcaagaacacaat
gctgaacatgatttattaatttggaaaaatgagctagtacgtggtgtcatcgacaaagct
caatttggaaagtttggtttagttcacacagtgcaagaactttatggatctaatagtgca
ggcattttgctttctgcattgagccgcttatttacactgttcttgcagtttcatgggttc
acgtgtgggctagatgacctcatcatattacctcattttgatcttcagagaaaggagaaa
cttgaaggagaagatgtaggtgaagaggtccactgcgattttgttaagttcaaacctggg
caaataggccctgaagagctgcagttggaaattgagaaagtcatatgcagtgacagagaa
tcttcaactgcaaccttggacatgaaaatgaaaaataaattgacaaataggctaactaga
gaaggttctcagatactcaagcatttactgactaggggattgttgaaaccttttccaaag
aattgcatctctgtgatgaccacgacaggcgctaagggtagtacggtgaatttccaacaa
atatctgcctatctaggacaacaggagttagaaggtaaaagagtgcctcgaatggtttct
gggaagactttgccctcctttcctccctgggattacacagctagagcaggaggcttcatc
actgatcgctttctttctggtctccgacctcaggagtattacttccattgcatggctggt
cgtgaagggttagttgacactgcagtaaagacatctcgcagtggatatctacaacgttgt
ctgataaaaaatctggagagcctcaaagtttgttatgactatacagttcgtgattctgat
ggttcaatcgttcaattttattatggagaagatggtgttgatgtccacaagacaagcttt
ctgaaaaatttcaaggcactacaagataatcgagaaaccatctgccagaaatttcagaac
caacgtcaattcaatagttacatcagcgaattgcccaaggggcttgaagaagaagccagg
cgctatattcatgaagcgcaagaaaaatcatcaaaaaaacagattcttagaagacacaaa
ggtaaaaagaaggaacggttgttagagaaagaaaaggcatttgctgaagagcaaggcttt
ttagagctggtgaagcagaaatatctatggagtcttgcagaatcaggagaaccagttggt
gtcattgcagctcagtcagtaggcgagccatcaacgcagatgacactcaacacttttcat
ctggctggccgtggagaaatgaacgtgaccctaggtattcctcggctccaggagattttg
atgactgcatcagatgtcattaagactcccattttgacctgcccattcgcagattttaga
tccaagcgtgatgtcgtggccctagtctcaaaggtgaagagagtctctgtggcggatctg
gtagagagtatggaagttcgactctcaattgatccgcacaaggtgtctagaacttataag
ttgaaaatgaaactcaaagagactgagtttgtgtcgtcacaggacatgaaggatactctc
gaaactgtgtttctatatgaattagaggatgcaattgaaaatcatatcattttcctctcc
aaaattagtggcattaaaaacttcatgtctagttcgatatccggtgaagctgatgaagac
gaatcaggggcgagatcaacagaagtagacgatgatgatgacaatgatgatgatgatgat
gacaagggagatgacctcgattctgatgcacagaagagaaagcaacaagcttctgatgaa
ctggactatggtgatggatctgatgttgaccatggtgaagatgagttatccacagatacg
gagaaaaggaagagcgacgtagatcttgaggatatggataccagcaaagatgacggaacc
gatcgctccgacaaaaaagaggatatggattccatccaaggcggcagtacatctggaaga
gatctttattcaggaaaaggtttttccagtaagaaaatcaaacgtgctgtcaagttggaa
ttcaaaggattgtcgtatgatgcccacttcagatttactgacgagcctcatattttgctc
gcgcagcttgcccagagaacagctaaaaaggtattcatcaagaggactggcaagatgagc
caatgtagattagtacaatacgatcccgacgagaaaacagtcatctggaacgacaccaag
aagccaaagatgggcgagaacagaccggaagcgggtgcagacgacgcgttgtattgggca
atgaaggcatcgggcgtggactttaagtcgctctgggagatgcacgaggacctcgacctg
agccgtctctactccaacaacgtgcatgcggtgctgaacacttacggagttgaggcagct
cgagcgacgctgatacgggaggtgaaacaggtgttcgatatctacggggtgaagattgac
taccggcatctgagcctgatcgctgattacatgacgcataccggtgggtataggccgatg
agtcggcacggaagtatatcggagtcgttatctccgttcctaaagatgtcgtttgagacg
gcgtcgaagttcattgttgaagcggcgtctctggggctaaaagatgacctagagaccccg
tcgtccaggatctgcctaggtctgcctgtcaaagttggtacaggctgttttgacttgatg
cagaaattggattcttga
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integrated database retrieval system
