Schistosoma mansoni: Smp_019130
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Entry
Smp_019130 CDS
T01095
Name
(RefSeq) cleavage/polyadenylation factor ia subunit clp1p, putative
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
smm
Schistosoma mansoni
Pathway
smm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Smp_019130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_019130
Enzymes [BR:
smm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
Smp_019130
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Smp_019130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_16
CbiA
AAA_24
nSTAND3
RsgA_GTPase
ATP_bind_1
AAA_22
KTI12
MMR_HSR1
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
8348004
NCBI-ProteinID:
XP_018644897
UniProt:
G4LUE4
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Position
1
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AA seq
442 aa
AA seq
DB search
MNGVKDFTRSNPSIRSYTLEKYQMLRFEVTSPSGLTLVSGAAEVFGTELVCGWELQLYPG
QRGTVVTFHGCKLIVQDQGVAAYIIASSEDQEIVHVYMNIHANLEVSRQKAVKEQSRGPR
VLVCGQESVGKSTLCRTLASYAARRKHKPILVDVNVGLNQVCIPATIAAISVTKPYDLME
GWSLEEDPLVFCFGHTDPASNLNLFREQVNRLAELINIRSENDMSIFTSGCIINMSGFRK
DDSDGGSSKEKGIQAIRTTAAAFEVDTLLVIEDGFLASFLREDLPPEVTIVRLPKSSGAI
TRSPDQWTRQRDARVCAYLHGENPLRRLHPHQITLKSSEYSIYKVGTEAIPDALLPHGAQ
EEETWRNPIQVSVSRDLKNRLLAVSQASEPYQVPEAPVYGFVVVVNVSEDKSSFTILSPS
PHPPPNNLFLLTSICYVDPESL
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcgtgaaggattttacacgatctaacccgtctattcgatcatacactctggag
aaatatcagatgcttcgttttgaagtcacttcgccatctggcttgactttagtttctggt
gctgctgaagtttttggtactgaactcgtttgtggttgggagttacagttatatccaggt
caacgaggaacagttgttacattccatggttgtaaactgattgttcaagaccagggagtt
gctgcctatataatcgcgtcatctgaagatcaagaaattgtgcacgtatatatgaatatt
catgcaaacctagaagtttcacgacaaaaagctgtaaaggagcaaagtagaggaccacgc
gtattagtatgtggtcaagaaagtgttgggaagtctacactttgtcgcactttggcaagt
tatgcggcccgtagaaaacacaaaccaatacttgtagatgttaacgtcggactcaaccag
gtgtgtataccagcaactattgccgcaataagtgttaccaaaccatatgatttgatggaa
gggtggagtctagaggaagatccgctagtgttttgtttcggtcacaccgatcccgcaagt
aacttgaatctttttcgagaacaagtgaatcgactagctgaacttatcaatattcgttct
gaaaatgatatgagtatattcactagcggttgtataatcaatatgagtggatttcgtaaa
gatgattcagatggtgggtcaagtaaagaaaagggtatacaagccatacgaacaactgct
gcagctttcgaagttgacacattattggtcatagaagatggatttttggcttcgttcctg
cgtgaagatcttcctcccgaggtaactatagtaagattgcccaaatcgtcaggtgctata
actagaagtccagatcagtggacacgtcagcgagatgctcgagtctgcgcctatttacat
ggcgaaaaccccttgagacgtctacatccacatcaaataacgcttaaatcttctgagtat
tcaatttacaaagttggaactgaggctattccagacgcacttctcccacatggagcacaa
gaagaagaaacatggcgtaatcccatccaggtttcagttagtcgagatttgaaaaatcgt
ctgttggcagtttctcaagcttcagaaccttatcaagtcccagaagctcctgtttatgga
tttgtcgtagttgtcaatgtttccgaggacaagtcctcgttcaccatactcagcccaagt
ccacatcctcctccaaataatctatttttattaaccagtatttgttacgtcgatcctgag
tcattgtaa
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