Salvelinus namaycush (lake trout): 120026015
Help
Entry
120026015 CDS
T07522
Name
(RefSeq) neurogenic locus notch homolog protein 1-like
KO
K02599
Notch 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
120026015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
Ank
Notch
NOD
NODP
EGF_2
Ank_4
Ank_3
Ank_5
EGF_3
cEGF
DL-JAG_EGF-like
Motif
Other DBs
NCBI-GeneID:
120026015
NCBI-ProteinID:
XP_038826721
UniProt:
A0A8U0PIW7
LinkDB
All DBs
Position
Sna31:47223793..47290535
Genome browser
AA seq
2487 aa
AA seq
DB search
MYRFFVKLTFLIPVIVITQGLRCSLTTESCLNGGRCEASSDRNGECRCTSDYVGSRCQYS
NPCNPSPCRNGGECRAVSHGNTFEFHCKCRLGFSDQLCLTPTNHACMSSPCRNGGTCDLI
TLSDYRCRCPPGWSGKTCQIANPCASNPCANGGQCSPFESHYICACLPAFHGQTCKQDVN
ECAQMSSPCRNGGMCVNEVGSYHCRCPQEYTGANCETPYMPCSPSPCHNGGTCVQKGDTT
YDCSCLPGFTSQNCDHNIDDCPGHNCQNGGLCVDGVNTYNCQCPPHFTGQFCTENVDECE
MMPNTCQNGGTCHDTYGSFHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNQDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCQNDATCLDQIGGFHCICMP
GYEGVFCQINTDECASMPCLNNGKCIDRINSFHCECHKGFSGGLCQVDIDECASTPCMNG
AKCTDGPNKYSCECTEGYSGQHCETDINECYSDPCHYGTCKDGLATFTCYCHPGYTGRLC
ETNINECLSQPCQNGGTCQDRENTYICTCPKGTAGFNCEVNLDDCKSKPCDYGRCIDKIN
SYECACEPGYAGAMCNINTDECAINPCHNGGTCIDSINSFTCLCPEGYSDATCLLQVDEC
GSNPCIHGRCQDLVNGYRCFCDSGWGGPNCDINNNECESNPCMNGGTCKDMTSGYVCSCR
AGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGETCETLLAPCSPRPCKN
GGVCHESEDYQSFSCLCPEGWQGQTCEIDINECVKSPCRSGATCHNMVGSYRCSCRPGYT
GQKCETDIDDCKPNPCSNGGLCRDGVDSFVCTCLPGFRGGRCEQDINECESNPCKNGANC
TDCVNSYTCTCPPGFSGINCENNTPDCTESSCFNGGTCVDGINTFTCLCLPGFTGSYCQH
DINECDSKPCLNGGTCLDSYGTYKCTCPHGYTGVNCQNLVRWCDSSPCKNGGSCWQQGSS
YTCQCQTGWTGLYCDVPSVSCEVAAKQQGVEVALLCRNSGQCLDAGNTHYCRCQAGYMGS
YCQEQVDECAPNPCQNGATCTDYLGGYSCECLPGYHGVNCSKEINECLSQPCQHGGTCID
LINTYKCSCPRGTQGIHCEINLDDCNPSTDPLTNEPKCFNKGQCVDRVGGYHCMCPAGYV
GERCEGDVNECLSDPCDLRGSYNCVQLTNSYRCECRTGYTGQRCDKVFDGCKGRPCRNGG
MCAVASNNPDGFICKCPPGYTGSSCEYDSRFCGSLNCRNGGTCVSGHLSPRCLCPAAFTG
PECQTPTNSPCNVNHCYNGGTCQRTSDAPFFHCSCPNNFNGLLCHILDYSFPGGFGRDIT
PPPEVEVSCEIPQCDEWAGNHICDSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYF
NDGKCDEQCKSPGCLYDGFDCQGQEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CANNMPEKLADGHLVLVVHIPPEQLKNGLSTFLRELSSVLHTNVVFRRDANGEPMVFPYY
GSEQELAKHNVKRSTDSWPDWAVVPANMLGQVKESVGSMVNLPRQRRELDLMQVKGSVVY
LEIDNRQCYQQSTECFQSATDVAAFLGALASSGNLNVPYIEAVTSVQPTPASSELYPMYV
VFLGLAVLGFICLGVLVSRKRRREHGQLWFPEGFKVSEPSKKKRREPVGEDSVGLKPLKN
ILDISLMDDSQNGLWGEEEPDSRRFRFEEQAMLDLDDRTDHRQWTQQHLDAADLRIPSIA
PTPPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLEMGNSEEEEDPSAEIISDFIYQGA
NLHNQTDRTGETALHLAARYARSDAAKRLLESTADANVQDNMGRTPLHAAVAADAQGVFQ
ILIRNRATDLDARMHDGTTPLILAARLAVEGMVDELINCHADANAIDDFGKSALHWASAV
NNVDAAMVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLEHFANREITDHLDQLPR
DIAQERMHHDIIRLLDEYNLVRSPGLHNGTLSATSLSPPLCSPNGYLGSLKPTAPGKKVR
KPGSGGKDGGKDMRIRKKKSLDGKGSLLDSSAVLSPVDSLESPHGYLSDVASPPMTSPFQ
QSPPMSFNHLQGSGDSHLGQMGMGKGQDMGRMPFDPNPPRLSHLPVSSPSSQGTITMAMG
GAGGRGQCDWHSRMHPGLGQQGGFNQGLPMSHGMMAPLRGVPTATLSRIMGYQGLQTSHL
GTPPHLMQQMHSRQNPQLQHQNSNSTTAGQVLSQSFLSSELSGSDLQQGNGAGRSVPIHT
ILPQETQILGTQFLTPPSQHSYSGPIDNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHSN
MSDWSEGISSPPMSLHSQMGLIPNQFK
NT seq
7464 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgaaactaacgtttcttattccagtcatcgtcataacacaaggt
ctaagatgctctctaactactgaatcatgtctgaatggagggaggtgtgaggcctcctct
gacagaaacggagaatgcaggtgtacaagtgactacgttggtagccgctgccagtactcc
aacccctgcaatccctcaccatgccgcaacgggggcgagtgccgcgccgtatcccacggc
aacacttttgagttccactgcaaatgtcgactgggcttctccgaccagctgtgcctgacg
cctaccaaccatgcctgcatgagctcgccctgtcgcaatggagggacttgtgacctgatc
acgctctccgactaccgctgccgctgcccgcccggatggtcagggaagacatgccagatt
gccaacccctgtgcatccaacccctgtgccaacggtggacaatgctcacccttcgagtcc
cactacatctgcgcgtgcctgcccgcctttcatggccagacctgcaagcaggacgtcaat
gagtgtgcccagatgtcgtcaccctgtcgcaacgggggcatgtgtgtgaatgaggtgggc
tcctaccactgccgctgcccccaggagtacacgggtgccaactgcgagaccccctacatg
ccctgcagcccctctccctgccacaatgggggcacttgcgtgcagaagggggacaccacc
tatgactgcagctgcctgccaggatttacaagtcagaattgtgatcacaacattgatgac
tgcccaggccacaattgtcagaatggtggcttgtgtgtggatggggtcaacacctacaac
tgccagtgcccccctcactttacaggccagttctgtaccgagaatgtggatgagtgtgag
atgatgccaaacacgtgccagaatggtggtacgtgccacgacacctatggcagcttccac
tgtgtctgtgtcaacggctggacgggcgatgactgcagtgagaacatcgacgactgtgcc
agcgcagcctgttatcacggtgccacatgccacgaccgcgtcgcctccttcttctgcgag
tgtccacatgggcgcacaggtttactgtgccatcttgacgacgcctgcatcagtaacccg
tgtcagaaaggctctaactgtgacaccaatcctgtcaacgggaaagccatctgtacctgc
cctccaggttacaccggctctgcatgcaaccaggacattgacgagtgttccttaggcgcc
aacccttgcgagcacggtgggcgctgcctgaacactaaaggctcgttccagtgcaagtgt
ctccagggttacgagggcccgcggtgcgagatggatgtcaacgagtgcatgtccaacccc
tgtcagaacgatgccacatgcctggaccagattggaggattccactgcatctgcatgcca
ggttatgagggggtgttttgccagatcaacactgacgagtgtgccagcatgccctgtctg
aacaacggcaagtgcatcgacaggatcaactccttccactgcgagtgccacaaaggcttc
tctggtggtctttgtcaggttgacatcgatgagtgtgccagcacgccctgcatgaacgga
gccaagtgtaccgacggccctaacaaatactcatgtgaatgcactgaaggttactctgga
cagcactgtgagactgacatcaacgagtgttactcggacccctgtcactatggcacgtgt
aaggacggcctggccaccttcacctgctactgtcaccctggttacacgggccgcctgtgc
gagaccaacatcaacgagtgtctgagccagccatgtcagaacggaggcacctgtcaggac
agggagaacacttacatctgcacatgccccaaaggcactgcaggctttaactgtgaggtg
aatctggatgactgtaagagcaagccctgtgactacgggaggtgcattgacaagatcaac
agctacgagtgtgcatgtgagccgggttacgcaggcgccatgtgcaacatcaataccgac
gagtgtgccatcaacccctgtcacaacggtggcacctgcatcgatagcatcaacagcttc
acatgcctgtgcccagagggctacagtgatgccacctgtctgttgcaggtggacgagtgt
ggcagcaacccctgcatccatggccgctgccaggatctggtcaatggctacaggtgtttc
tgtgactctggctggggtgggcctaactgtgacatcaacaacaacgagtgtgagtccaac
ccgtgtatgaacggtggcacctgcaaggatatgaccagtggatatgtttgtagctgccga
gccggcttcagtggacctaactgccaaactaacatcaacgagtgtgcctccaacccctgc
ctgaaccagggcacctgcattgacgacgtggccggctacaagtgcaactgcttactgccc
tataccggtgagacgtgtgagacactgctggccccatgcagcccccggccctgtaagaac
ggtggagtgtgtcatgagtcagaggactaccagagcttctcctgcctctgtccggaggga
tggcaaggtcaaacatgcgagatagacatcaacgaatgtgtgaaaagtccttgccgcagc
ggcgccacatgccacaacatggtgggcagctaccgatgcagctgccgtccgggctacacc
ggccagaagtgtgagacggacatcgacgactgcaagcccaacccctgcagtaatggaggt
ctgtgcagagatggagtggacagctttgtgtgcacttgtctgccagggttccgtggtggc
aggtgtgagcaggacattaacgagtgcgagagcaacccgtgtaagaacggggccaactgc
accgactgtgtcaactcctacacctgcacctgtccacccggtttcagtggcatcaactgc
gagaataacacccccgactgcacagagagctcttgcttcaacggtggcacctgtgtggat
ggcatcaataccttcacctgcttgtgtctgccaggcttcacaggcagctactgccagcac
gacatcaacgagtgtgactccaagccctgcctcaacggtggcacctgtctggacagctac
ggcacctacaagtgtacctgccctcatggctacactggagtcaactgccagaacctggtg
cggtggtgtgactcatctccctgtaagaacggaggctcgtgttggcagcagggctcctcg
tacacctgtcagtgtcagacgggatggaccggcctctactgtgatgtccccagtgtctcc
tgcgaggtggccgccaaacagcaaggtgtggaggtggctctcctgtgtcgtaactcgggc
cagtgtctggatgctggcaacacccactactgccgctgccaggcgggctacatgggcagc
tactgccaggaacaggtggacgagtgcgcccccaacccttgccagaacggtgccacctgc
acagactacctgggagggtacagttgtgagtgtcttcctgggtaccacggggtgaactgc
tccaaggagatcaacgaatgtctgtctcagccctgtcagcacgggggcacctgcatcgac
ctcataaacacctacaaatgctcctgtcccagaggaacacaaggcattcactgtgagatc
aacctggatgactgtaacccttctacggaccctctgaccaatgagcccaagtgtttcaac
aagggtcagtgtgtggacagagtggggggctaccactgcatgtgccccgctggctacgta
ggggagcgctgcgagggtgacgtcaacgagtgcctgtcggacccctgcgacctgcgaggc
tcctacaactgtgtccagctcaccaacagctaccgctgcgagtgtcgcactggatacaca
ggccagcgctgtgacaaggtgtttgatggctgtaaggggagaccatgtaggaacggagga
atgtgtgcagtggccagtaacaaccccgacggattcatctgcaaatgcccaccgggttac
acaggctcctcctgcgaatacgactcacgcttctgtggtagcctcaactgcagaaatggt
ggcacctgtgtctccggccacctgagccctcgttgcttgtgccccgcggcttttaccggc
cccgagtgccagactcccacgaacagcccctgcaacgtcaaccactgctacaacgggggc
acttgccagagaacctccgatgcacccttcttccactgcagctgcccgaacaacttcaat
ggcctgctctgccacatccttgattactcctttcccggtgggttcggccgggacatcaca
ccaccacccgaggtagaggtgagctgcgagatcccgcagtgcgacgagtgggcgggcaac
cacatctgtgactcgctgtgcaacaaccacgcctgcggctgggacggcggcgactgctca
ctcaacttcgatgacccatggcagaactgctcggcggctctgcagtgctggcggtacttc
aatgacgggaagtgcgacgagcagtgcaaaagccctgggtgtctctacgacggcttcgac
tgccagggacaggagggacagtgcaacccgctgtatgaccagtactgtaaggaccactat
gcggacggccactgcgaccagggctgtaacaacgcagagtgcgagtgggacggcctggac
tgcgccaacaacatgcccgagaagctagctgacggccacctggtccttgtggtccacatc
ccccccgagcagctaaaaaatggtttatccacgttcctccgtgagctcagcagcgttttg
cacaccaacgtggtgttccggcgcgacgcaaacggagagcccatggtgttcccctactat
ggcagcgagcaggagctggccaagcacaacgtgaagcgttccaccgacagctggcctgac
tgggcggtcgtgccggccaacatgctgggccaggtgaaggagagcgtgggatccatggtg
aacctgccccgccagcgccgagaattggacctcatgcaggtcaaagggtcggtggtatac
ctggagattgataaccgccagtgctaccagcagtccacggaatgcttccagagcgccacc
gacgtcgccgcgttcctgggagcactggcctccagcgggaatctcaatgttccttacatc
gaggcagtcaccagtgtgcagcccacccctgcatcctctgagctataccccatgtacgtg
gtgttcctggggctggctgtactgggcttcatctgcctgggggtgctggtgtcacgtaaa
cgccgacgggagcacggacagctctggttccctgagggcttcaaagtgtctgagcccagc
aagaagaaacgcagagagcccgtaggagaggactctgtgggactcaagccactgaagaac
attttggacatttctctgatggacgacagccagaatggattgtggggagaggaggagcca
gactcgagacgctttaggtttgaggagcaggcaatgttggacctagatgaccgcactgac
cacagacagtggacccagcaacacctggatgcggctgatctgcggatcccttccatcgcc
cccacgcctccccagggagagatcgagaatgactgcatggacgtcaatgtccgaggccca
gacggtttcactcctctaatgatcgcatcgtgcagcgggggaggcttggagatggggaac
agtgaggaggaggaggacccttcggctgagataatctctgacttcatctaccagggagcc
aacctgcacaaccagacggaccgcacaggcgagaccgctcttcaccttgccgcccgctac
gcccgttccgacgccgccaagcgactgctggagtccaccgccgacgccaacgtccaggac
aacatggggcgcactccactgcacgccgctgtggctgcagacgcacagggagtcttccag
attctgatccggaaccgggcaactgatcttgacgcccgcatgcatgatggaacgactcct
ctgatcctggctgcccgattggctgtggaaggcatggtggatgagcttatcaactgccat
gctgatgccaacgccatcgatgactttggtaaatctgcccttcattgggcttcagctgtc
aacaacgtggatgctgccatggtgttgttgaagaatggcgccaacaaagacatgcagaac
aacaaggaggaaactcctctctttctggcagccagagagggcagttatgagacggccaag
gtactgctggagcactttgccaaccgtgagatcaccgaccacctggaccagctgccccgg
gacatcgcccaggagcgaatgcaccatgacatcatccgtctgctcgatgaatacaacctg
gtgaggagcccagggctccataatgggaccctgagcgccaccagcctgtcccctcctctg
tgctcccccaacggatacctgggcagcctcaagcccaccgccccaggcaagaaggtccgc
aagccaggctctggagggaaggatggtggcaaagatatgaggatacggaagaagaagtcc
ctggacgggaagggcagtctgctggacagctcagccgttctctcgcccgtcgactccctg
gagtcgccccacgggtacctgtccgacgtggcgtcgccgccaatgacatcgccattccag
cagtctccgcccatgtcgttcaaccacctgcaaggcagtggagacagccacctgggtcag
atgggcatgggcaaggggcaggacatggggcgtatgccctttgacccgaaccctccccgc
ctgtcccacctgcctgtttctagccccagcagccagggaaccatcactatggccatgggc
ggagctgggggaagaggacagtgtgattggcactccaggatgcacccgggtctcgggcag
cagggtggcttcaaccaaggccttcccatgtcccacggtatgatggctcccctccgcggg
gtccccactgccaccctgtcccggatcatgggctaccagggcctgcagaccagccatctg
ggcacgccgccccacctcatgcaacagatgcactcccggcagaacccgcagctccagcac
cagaactccaactccaccacggccggccaggtcctgagccagagtttcctgagcagcgag
ctgagcggctcggacctgcagcagggcaacggggcgggtcgctcggtccccatccacacc
atcctcccccaggagacccagattctcggcacacagttcctcaccccaccctcccagcac
agctattccggcccaatagacaacacacccaatcaccagcttcaggtgcctgaccacccc
tttctaactccctcccccggatcccctgaccaatggtccagctcgtctccacattccaat
atgtctgattggtcagagggcatctccagtcctccaatgagtttgcattctcagatgggc
cttatccctaaccagtttaagtag
DBGET
integrated database retrieval system
