Salvelinus namaycush (lake trout): 120030627
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Entry
120030627 CDS
T07522
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03020
RNA polymerase
snh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120030627
09124 Replication and repair
03420 Nucleotide excision repair
120030627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120030627
03400 DNA repair and recombination proteins [BR:
snh03400
]
120030627
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120030627
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120030627
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120030627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
120030627
NCBI-ProteinID:
XP_038831985
UniProt:
A0A8U0PW17
LinkDB
All DBs
Position
Sna36:8156727..8173422
Genome browser
AA seq
1967 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEHDSEDITKEKGHGGC
GRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPKFSR
PEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIA
EDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSAR
TVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNG
DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTFRM
NLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA
VRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIR
THSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMGHDV
TRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNE
LEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQV
IAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGR
EGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQ
NMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKDDRE
ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVQGVQELSTKLVIVN
GEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL
GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPDFDV
TRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS
DENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE
EGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELNH
VISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASS
HGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFG
SAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYSPA
WSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP
TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY
SPSSPRFTPQSPNYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTS
PKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYS
PTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtctgtcacagaagggggaatcaag
tatcccgagaccacagaaggagggcgtcccaaactcggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacatgtgcaggtaacatgacagaatgccca
ggccacttcggccacatagagctggcgaagcctgtgttccacgtgggctttgtcaacaag
atcatgaaggtcctccggtgtgtctgctactcctgctccaagctgctggttgacacgaat
aatccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtatgacttgtgtaaaggcaagaacatctgcgagggcggagaggagatggataac
aagtttggagtggagcacgacagtgaggacatcactaaggaaaagggccatggtggctgc
gggcgctaccagccgcgtatccgccggtcgggcctggagctgtacgctgagtggaagcat
gtgaacgaggactcgcaggagaagaagatcctgctgagccccgagcgtgtctacgagatc
ttcaaacgcatctcggacgaggaggacgtcatcctgggccttgatcccaagttctcccgg
cccgagtggatgattgtcacggtactccctgtgccgccgctagctgtccggcccgccgtt
gtcatgcagggctccgcccgtaaccaggacgacttgacacacaagctggccgacatagtc
aagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccacgtcattgct
gaggacgtgaagctgctgcagttccacgtggccaccatggtggacaacgagctgccaggc
ctgcccagggcaatgcaaaaatcgggccgcccgctcaaatccttaaaacagcgtctgaag
gggaaggaggggcgagtccgaggtaacctgatggggaaacgtgtggacttctccgcccga
accgtcatcacccccgaccccaacctgcagatcgaccaagtgggcgtcccgcgctcaatc
gccgccaacatgactttcccagaaatcgtcacaccctttaacattgacaggttacaggag
ctggtgcgcagaggcaacagccagtatccaggagccaaatatatcatccgagacaacggg
gacagaatcgacctgcggttccaccccaaaccaagtgaccttcacctccagatcggctac
aaggtggaaagacatatgtgcgacggtgacatcatcatcttcaacagacagcccacttta
cataaaatgtctatgatggggcacagagtccgaatccttccctggtccaccttccgaatg
aacctcagtgtaaccactccgtacaatgctgactttgacggggatgagatgaacctgcat
ctccctcagtccctggaaacgagagctgagatccaggagcttgccatggtgcctcgtatg
atcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacacactcaccgcc
gtgcgcaagttcaccaaaagggacgtcttcctagagcggggcgatgtgatgaacctcctg
atgttcctgtccacttgggacggcaaggtgccccagccagccatcctgaagccccggcca
ctctggactggcaagcagatcttcagccttatcatcccgggccacatcaacgccatccga
acacacagcacccacccagacgaggaggacagtgggccctacaagcacatttctcctggg
gacaccaaggtgatagtggagaacggggagctgatcatgggcatcctgtgtaagaagtca
ctgggtacctctgctggctccctggtccacatctgtttcctggagatgggccacgacgtc
acccgcctcttctactccaacatccagacggtggtcaacaactggctgctcattgagggt
gcctctatcggtattggtgactccattgctgatgcaaagacatacctggacatccagaac
accatcaagaaggccaaacaggatgtaatagaggtcattgagaaggcccacaacaacgag
ttggagcccacccctggcaacacgctgaggcagacctttgagaaccaggtgaatcgcatc
ctcaacgacgcccgtgacaaaaccggttcctccgcccagaagtccctgtctgagtacaac
aacttcaagtctatggtggtggccggctccaaaggctccaagattaacatctctcaggtt
attgcggtggtggggcagcagaacgtggagggtaagcgtatccccttcggcttcaagcac
cgaacgctcccccacttcatcaaggatgattacggccccgagagcagaggcttcgtggag
aactcttacctggccggcctcacgcccacagagttcttcttccacgccatgggaggcagg
gaggggcttatcgacacggctgtgaagaccgccgagaccggttacatccagcgtcgtctg
atcaagtccatggagtctgtgatggtgaagtatgacgccacggtgaggaactctatcaac
caggtggtgcagttgcgctacggagaggacggcctggccggggaggctgtggagttccag
aacatggccacgctcaagccctccaacaaggccttcgagaagaagttcagatttgactgc
accaacgagcgggctctgaggcgcaccctgcaggaggacgtggtgaaggatgtgatgacc
aacgcccaggtgcagagtgccctggagagggagtatgagaagatgaaggatgacagggag
attctgagggccatcttccccactggggacagtaaggtggtgctgccctgcaacctggcc
aggatgatctggaacgcccagaagatcttcaggatcaacccccgcacccccacagacctc
aaccccctacgagtcgtacagggtgtccaggagctgagtacgaagttggtgattgtgaac
ggcgaggaccacctgagcagacaggcccagcagaacgccacgctgctcttcaacatccac
ctgcgctccacgttgagctcccgacgcatgacagacgagttcagactgagcaccgaggcc
tacgactggctgctgggggagattgagtccaagttcaaccaatccatcgcccacccgggc
gagatggtgggggcgttagctgcccagtcgctgggagagcccgccacccagatgaccctg
aacaccttccattacgccggcgtgtcggccaagaacgtcaccctgggcgtgccgcgtctc
aaggagttgatcaacatctccaagcggcccaagaccccgtccctcaccgtgttcctgctg
ggccaggcggcccgcgacgccgagagggccaaggatatcctctgtcgcctggaacacact
accctcagaaaggtgacggccaacacggccatctactacgaccctaacccccagagtacg
gtggtgacggaggaccaggagtgggtcaatgtctactatgagatgcccgacttcgacgtg
acccgcatctcaccctggctgcttcgcattgagcttgaccgcaaacacatgactgaccgc
aagctgaccatggagcagatcgctgagaagatcaatgcaggtttcggagacgacctgaac
tgtatcttcaatgacgacaacgccgagaagctggttctgcgaatccgcatcatgaacagc
gacgagaacaaattccacgaggacgaggaggtggtggacaagatggacgacgacgtgttc
ctgaggtgcatcgaatccaacatgctgacggacatgacgctgcagggcatcgagcagatc
agcaaggtgtacatgcacttgccccagacggacaacaagaagaagatcatcattacggag
gagggagagttcaaggccctgcaggagtggatcctggagacagacggcgtaggactgatg
agggtcctcagcgagaaggacgtggaccccgtcagaaccacctccaacgacatcgtagag
atcttcacggtgctgggtatcgaggctgtgcgcaaggctctggagagggagttgaaccac
gtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctttgcgacacc
atgacgtgccgcggtcacctgatggccatcacgcgtcacggcatcaacagacaggacacg
ggacccctcatgaagtgctcctttgaggagactgtggatgtgctgatggaggcgtcgtcc
cacggggagagtgaccccatgaagggtgtgtctgagaacatcatgctgggccagctggcc
ccctgcgggacaggctgcttcgacctgctgctggatgctgagaagtgcaaatacggcatg
gagatcccaaccaacatccctggcattagcgtggctggacccaccggaatgttctttggc
tctgcgcccagtcccatgagtggcatgtctccagccatgaccccctggaacactggagcc
acccccgcctacggtgcctggtcccccagcatcggcagcgggatgacccctggagctgca
ggcttttctcccagcgcagcgtccgacgccagtggcttctctccgggctactccccggcc
tggtcccctacccctggatctcctgggtcccctggaccagccagcccctatatcccctct
ccaggaggtgccatgtctcccaactactcccccacctccccggcctacgagccccgctct
cctgggggatataccccgcaaagcccgggctactccccaacgtccccctcctactcccca
acctccccctcttactcccccaccagccccaactacagccccacctcaccctcctattca
cccacctcccccagctactccccgacctccccctcatactcccctacgtcccccagttac
tctcctacctccccatcttactcacccacctcaccctcttactcccccacatctccctcc
tactcccctacctcccccagctacagccccacgtctccaagctacagccccacatcgcct
agctactcccccacctcaccctcttactctcccacctccccctcctattcacccacttca
ccctcctactcccctacctccccctcctattcccctacctccccctcttactcccccacc
tctccaagctacagcccctcttcacccaactacaccccaacatcgcccagttactctccc
acctccccctcttactctcccacctccccctcctactcccccacctcccccaattacacc
cccaccagccccaactactcccccacctccccctcttattctcccacctctccatcctac
tctccctctagcccgcgcttcaccccccagtctcccaactacacccccagctctccctcc
tacagccccagctctccttcctactcacccacctcccccaaatacacacctacgtccccc
tcttactcccccagctctccagagtacacccccacctcccccaaatactcccccacctcg
cccaagtactccccgacctctcccaaatactcacccacctccccgacttactccccgacg
acccccaagtacagccccacgtcgcccacctactcccccacctcgcccacctacaccccc
accagccccaagtactcccccacctccccaacctattccccaacctcacccaaatactct
cccacctcccccacctactcgcccactagccccaaagggtccacctacagccccctgtct
ccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatcagcccagat
gacagtgacgaggagaacaactga
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