Salvelinus namaycush (lake trout): 120045337
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Entry
120045337 CDS
T07522
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04020
Calcium signaling pathway
snh04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
120045337
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
120045337
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120045337
Ion channels [BR:
snh04040
]
Ligand-gated channels
Glutamate (ionotropic)
120045337
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
NMDAR2_C
MatE
Motif
Other DBs
NCBI-GeneID:
120045337
NCBI-ProteinID:
XP_038846145
UniProt:
A0A8U0QMI4
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All DBs
Position
Sna4:complement(8522848..8577651)
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AA seq
1452 aa
AA seq
DB search
MQDLGSSILGPPPRPTPLACSSAMPQKIEDQHQLVPKAVMGLLPGQPPPFLLLFILFLSS
LPPLLSRPLILHPSINVAVMFSGSAYQNEVRGRLSRENFADLPLEVNPVTVLVNDTNPRA
LLTRLCQTMATEKLHGVVFEDDVGSGAGPQVAEVAQILDFLSTQTALPIIGISGGSAVVI
PHKAEGSTFLQMGASLEQQIVCMFKLMEEYDWGDFVVITSMLPGYETFVDYVRSYTDTSY
FLWRLQDILSLEMSIGTSDVRAKRMLQQIDSQVLVAYCSHEEAQYLFQVAGEVGLLGPGY
IWILPSLALGNTESPSPSSFPIGVIGVITDQWRKSLRQRVREGVAIVAKGAESFKRHQGF
VPEGHSDCNTPVTHINNNTLFRHMLNVTWEHKDLSFNSDGYLTNPSMVIIALNRDRQWDK
VGTLERGILQVRYPVWPRYGSFLEPVSDDRHLTVATLEERPFVIVENVDPDTGTCVRNTV
PCRRQSNRTESLVGHSEPYTKLCCKGFCIDILKKLSRTIKFSYDLYLVTNGKHGKMISGI
WNGMIGEVFYGKADMAIGSLTINEERSEIIDFSVPFVETGISVMVARSNGTVSPSAFLEP
YSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLLSAKAAGGPTFTIGKSVWLLWGIV
FNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQK
PQEHYPPFRFGTVPNGSTERNIRSNYPDMHAHMVKYNQKGVEEALNSLKTAKLDAFIYDA
AVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRPIDLALLQFLGDGDTQRLE
TVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFSWEHLLYWKLHKELDKS
PRMDFLLAISRGIYSCFNGVEEPDLPNLANPDLTANYAQANMLKMLRTAKDLVNSAQVET
SLDHATKTIEHWGRHGGSLPVHIPQQGTMETVPGGFAYVTENTHPPPERPLSPQYCTLGV
VTSVNQQRGLARPTPLRYTLPARTSSLYDRPLPVSSLICPHLDLAGGDRLSSCPHPSTGR
LYVDPQHLSHPRSPFIPYSELQLPDIYLSSHPPSAVSHPPHTEPSKRKRKSKSLLSGETG
RGGGQRRRRREEKTVCLAELRANHLQENHVSPHMPDSLYPGKVLCPGEEGCGGSWPLPLE
ELVLAGRRRLHRRPSFLRATWGSEQIRLPDDTPPTSLDSQSHSALPDLFPCVMVDQETPT
KLYNPTPFRNNLCYPAASPRQHAYLHIRQDQRKGNSRKKLRHSHSTHLPTYREVVLGGQE
GGGGVGLGVVRRTTSLLSRQYNDYLTSYPGLPLYHSPLNLQAHSPASSNHPSPGTYRIPS
PVCQLLACGGGCRSQRGLLYQDSLYGAYGAYRGAQDPALEPQREEGSVGLRSEDRPCVTR
PWGKVSSLESEV
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgggaagctctatcctgggcccacctccaagacctactccactggcctgt
tcctcagcgatgccacaaaagattgaagaccagcaccagcttgtcccaaaggcagtaatg
ggtcttcttccaggacagcctcctcctttcctcctcctcttcatcctcttcctctcctcc
cttcctcccctcctctcccgccctctcatcctccatccttctattaatgtagcagtaatg
ttcagtggctctgcttaccagaatgaggtcaggggtcgtttgagcagagagaacttcgct
gatcttcccctagaggtgaacccggtcactgttctggttaatgacaccaaccctcgagcc
ctgctgacgcgtctctgtcaaaccatggccacagagaaactgcatggagtcgtgttcgag
gacgatgtgggatcaggagctggacctcaggtggcagaagtggctcagatcctggacttc
ctgtcgactcagacagctctacccatcattggcatcagcggaggatctgccgttgtcata
cctcacaaggctgagggttccacgttcctccagatgggcgcatcactggaacagcagatt
gtctgcatgttcaagttgatggaggagtatgactggggagactttgtagtcatcacaagc
atgttgccgggatacgagacatttgtggactacgtccgctcctacaccgacacttcctac
ttcctgtggaggctgcaggatatcctgtctctggagatgtctatcgggaccagcgacgtc
cgcgccaaacgcatgttacagcagattgattcccaggtactcgtagcctactgctcccat
gaagaggcccagtacctgttccaggtagcaggggaggtgggtctattggggcctggctac
atctggatcctcccctccctcgcgttgggcaacacagagagcccttcacctagcagcttc
cccataggagtgattggcgtcatcaccgaccaatggaggaagagcctgaggcagcgggtc
agagagggagtggccatagtggccaaaggggcggagagtttcaagaggcatcaggggttc
gttcccgagggacacagcgactgcaacacaccagttacacacattaacaacaacacactg
ttcagacacatgctgaacgtgacatgggagcataaggacctgtcgtttaatagtgatggt
tacctgacaaacccttccatggtcatcatcgctctgaacagagacagacagtgggacaag
gtggggacattagagcggggtatcctccaggtgcgttatccggtgtggcctcgatatggc
agttttctcgagccggtatcagatgatcgccacctgacggtagccactctggaggagagg
cccttcgtcatcgtagagaacgtggaccccgacacgggaacctgtgtacgcaacaccgtg
ccctgccgacgccagtccaaccgcaccgagagtcttgtgggtcactcggagccctacacc
aagctgtgctgtaaggggttctgcatcgacattctgaagaagctgtctcgcaccatcaag
ttctcctacgacctctacctggtcactaacgggaaacatgggaagatgatcagtggcatc
tggaacggcatgatcggagaggtgttctacgggaaagcagacatggccataggttctctc
accataaatgaggagcgttctgagatcatcgacttctctgtgcccttcgtcgagaccggc
atcagcgtcatggttgcccgtagcaatgggactgtctccccctccgccttcctcgagccc
tatagcccagcggtgtgggtgatgatgtttgtaatgtgcctgaccgtggtagctgtgacc
gtattcgtgtttgagtacttcagtcctgtcggctacaaccgcagcttgctcagcgctaaa
gcggcaggaggtcctaccttcaccatagggaagtcagtgtggttgctttggggcatcgtg
ttcaataactcagtccccatcgagaaccctaaaggaaccaccagtaagatcatggtgctg
gtgtgggccttcttcgcggtcatcttcctggcttcctacaccgccaacctggctgccttc
atgatccaggagcagtacatagacactgtgtctggactgtctgacaagaagttccagaag
cctcaggagcactaccctccattccggtttgggacggtccctaacggcagcacagagagg
aacatcaggagtaactaccccgacatgcacgcacacatggtcaaatacaaccagaaagga
gtggaggaagccctcaacagccttaagacagcgaagctggatgcttttatctatgatgct
gcggtgttgaactacatggcagggaaggacgagggctgtaagcttgtgactattggctct
gggaaggtgtttgctacaacgggctatggtatcgccctgcagaaagactcccgatggaaa
cgaccaattgacctggccttattgcagttcctgggagacggtgacacccagcgcttggag
acggtctggctgtcaggcatctgtcagaatgagaagaacgaggtgatgagcagtaagctg
gacatagacaacatggccggggtcttctacatgctgctggtggccatggggctcagtctg
ctggtgttctcctgggaacatctactctactggaaacttcacaaggaactagacaagtct
cccaggatggacttcctgctcgccatcagcaggggtatctacagttgcttcaacggggtg
gaggaaccagacctccctaacctggccaacccagacctgacagctaactatgcccaggct
aacatgctcaagatgctacgcactgctaaggacctggttaactccgcccaagtcgagacc
tcactggaccacgccaccaagaccatagaacactggggacgccatggcggcagcctgcca
gtccacattccgcagcaaggcaccatggaaacagtcccgggagggttcgcttatgtcaca
gagaatacacacccgccccccgagcgccccctcagcccacaatactgcacgctgggtgta
gtgacatctgtgaaccagcagagggggctggcgagacccacaccgctacgatacacgctc
ccggctcgtacttcctctctctacgacagaccacttcctgtttctagtctcatttgccct
caccttgacctggctgggggggaccgcctctcttcttgccctcacccctccacaggtagg
ctctatgtggacccccaacacctttcccacccccgctctcccttcatcccctatagtgag
ctccagctcccagacatctacctctcctctcatccaccctctgctgtctcccatcccccc
cacacagagccctccaagaggaagagaaagagcaagagcctcctctcaggggagacagga
agaggaggaggacagaggaggcggcgcagggaggagaagacggtgtgcctggctgaactc
cgggccaaccacctccaggaaaaccacgtctcgccccacatgcctgactccctgtaccca
ggaaaggtgctctgtcctggggaagagggctgcggtggctcctggcctcttcctctggag
gagctcgtcctagcaggcagacggcggctccaccgacggccatctttccttcgagccacc
tggggcagcgagcagattcgcctgccggacgatactccgcctacatccctcgatagccaa
tcacattctgctttaccagacttatttccctgcgtcatggtcgaccaagaaactcccact
aaactctacaaccccaccccgttccggaacaacctatgctatcctgccgcctcaccccgc
caacatgcctatcttcatataaggcaggaccagaggaaaggaaactcacgtaagaagctg
cggcactcacactccacccacctgcccacatacagggaggtcgtgctggggggccaggaa
gggggaggtggggtaggcctgggggtggtccggagaaccaccagcctgctcagcagacag
tacaacgactatctaacctcctaccctgggctgcctctataccacagccccctcaacctc
caggcccattccccggcgtccagcaaccaccccagccccggtacctaccgtatccccagc
cctgtatgccagctcctggcctgtggagggggctgtcgaagtcagagggggttgttgtac
caggacagtctgtatggagcctatggagcctatcgaggggcccaggatccggccttagag
ccccagagagaagagggctcggtagggttgaggtctgaggacagaccctgtgtgactcgg
ccctggggaaaagtctctagtctggagtcagaggtctga
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