Salvelinus namaycush (lake trout): 120055623
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Entry
120055623 CDS
T07522
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04020
Calcium signaling pathway
snh04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
120055623 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
120055623 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120055623 (grin1b)
Ion channels [BR:
snh04040
]
Ligand-gated channels
Glutamate (ionotropic)
120055623 (grin1b)
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GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
SIP
DUF6724
Motif
Other DBs
NCBI-GeneID:
120055623
NCBI-ProteinID:
XP_038859440
UniProt:
A0A8U1EPT7
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Position
Sna1:46217842..46269643
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AA seq
938 aa
AA seq
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MRVFLLAFFISCSCAGGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANTLYGKDKFKMNAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAQVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKNKNYENLDQLSYDNKRGPKAEKVLLFSQDTNLTSMLLEAKDLEARVIILSA
SEDEAASVYKAARQLNMTGSGYVWLVGEREMSGKALSEAPDGLLGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWRTGPLFKRVLMSSKYPDGLTGRIEFNDD
GDRRFATYSILNYQKTRLVQVGIFNGTQVVMNPQRKIIWPGGETEKPRGYQMSTRLKIVT
IHQEPFVYVQPTTSDGTCQKEKTVNGLKDVQKVICTGPNGTIPGQPIVPQCCYGFCIDLL
IKLADTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNER
AQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRF
SPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMII
VASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMY
RHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMR
KDSPWKQNVSLSILSSHENGFMEELDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGG
IVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKSDRAEPDSKQKTSFRSI
STNLASNIKRRRSSKDTPYPTDITGQLNLSDPSVSTVV
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtatttctgcttgcgtttttcatctcctgctcctgtgcgggtggtggatgtgaa
cctaagattgtcaatatcggagcggtcctgagccagaagagatatgaacaggtgttcaag
gacgccgtcacccaggcaaacactctgtatgggaaagataagttcaagatgaacgccatc
tctgtcactcataaacccaatgcaattcagatggcgctctccgtctgcgaggacctcatc
tcgaaccaggtgtatgccattctggtgagccacccgcctcagtcgaatgaccatctgacc
cccacacccgtgtcctacactgcagggttctaccgtatccctgtggttgggctcaccacc
cgcatgtccatctattcggacaagagcatccacctgtctttcttgcgtaccgtgcccccc
tactcccaccaagcccaggtgtggttcgacatgatgagagagttccgctggaaccacatc
attctgatagtgagcgacgaccacgagggccgcgctgcccagaagaggctggagaccctg
ttggaggagagggagaccaagaataaaaacaagaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggcagagaaagttctcctgttcagccaagacaccaac
ctgacatccatgctgctggaggccaaggacctggaggctcgcgtcatcatcctctctgcc
agcgaggacgaagcagcgtcggtctacaaagctgcgcgccagctcaacatgacgggctct
ggctacgtgtggctggttggagagagggagatgtctggtaaagctttgagtgaagcacca
gatggcttgctcggccttcagctcatcaacggcaagaacgagtcggcgcatatcaacgat
gccgtggccgtggtggcacagtccatccaggagctctttgagaaggagaacatcacagaa
ccgcctcgcggctgtgtaggcaacacaaacatctggaggactggaccgctcttcaaacga
gtgctgatgtcatccaagtacccagatggcctgacaggacgcattgagtttaatgacgat
ggtgacaggcggtttgctacctatagcatcctcaactaccaaaagaccaggctggtgcaa
gtgggcattttcaatggcacccaagtggtgatgaatccgcagaggaagatcatttggcca
ggaggagagacggagaagccaagaggataccagatgtctaccagactaaagatagtaacc
attcatcaggagccatttgtctatgtccaacccacaacaagtgatggaacttgccaaaaa
gaaaaaactgtaaatggacttaaagatgtccagaaagttatatgcactggccccaatgga
accatcccaggacagcctatagtaccccaatgctgctacggcttttgcattgacctcttg
attaaactagcggataccatgaacttcacctatgaggttcatctggtggctgatgggaag
tttggtacacaggagcgggtaaacaacagcaacaagaaggagtggaatggaatgatggga
gaactcctgggtggcctggcagacatgattgtggctccgctcacgatcaacaacgaacgc
gcccagtacatcgagttctcaaaaccctttaagtaccaggggcttaccatcctcgtgaaa
aaggaaataccacgcagtactttggattcgttcatgcagccctttcagagcaccctgtgg
ctgctggtgggtctatcggtccatgtggtggcggtgatgctctacctattagaccggttc
agcccatttggaaggtttaaagtgaatagtgaagaagaagaagaggacgccctcacctta
tcctccgccatgtggttctcttggggggtccttttgaactccgggataggagaaggagca
ccccggagcttttcagcaaggatcttaggtatggtgtgggctggatttgccatgatcatt
gtggcatcctacacagccaatttggcagccttcctagtgttggaccggcctgaggagcgc
atcaccggcatcaatgaccccaggctgcgaaacccatcagacaagttcatctacgccaca
gtgaagcagagttcggtggacatctacttccggcgccaagtggagttgagcaccatgtac
cgccacatggagaagcacaactacgaaagcgctgctgaggccatccaagctgtgcgcgac
aacaaactgcacgcgttcatctgggactctgccgtcttggagtttgaggcatcacagaag
tgtgacttggtgacaacgggagagctgttcttccgctccggcttcggcataggcatgcgg
aaggacagcccttggaagcaaaacgtttccctgtccattcttagctctcatgagaatggg
ttcatggaggaactagataaaacctgggtgagataccaggagtgtgactccagaagcaat
gccccagccaccctcacttttgagaacatggcaggtgtgttcatgttggttgctgggggt
atcgttgctggaatcttcctcatctttattgagattgcgtataagcgccacaaagatgcc
cgcaggaagcagatgcagctggccttcgctgcggtcaacgtgtggaggaagaacctacag
gataggaaaagtgatagagcagagcctgactccaaacagaaaacctcttttaggtccatc
agtaccaacctggcctccaacatcaagagacgtaggtcctccaaagacacgccttatccc
acggacatcacaggccagctcaacttgtcagacccctctgtcagcacggtggtgtga
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