Salvelinus namaycush (lake trout): 120058119
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Entry
120058119 CDS
T07522
Name
(RefSeq) neurogenic locus notch homolog protein 1-like
KO
K02599
Notch 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
120058119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
Ank
EGF_2
Notch
NOD
NODP
Ank_3
Ank_5
Ank_4
DL-JAG_EGF-like
EGF_3
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
120058119
NCBI-ProteinID:
XP_038862550
UniProt:
A0A8U1C7D4
LinkDB
All DBs
Position
Sna1:19312802..19375874
Genome browser
AA seq
2522 aa
AA seq
DB search
MHPFFVKLTFLLSLIVLTRGLRCSMSTELCLKLGRCEATADGNGECKCRDGFVGSKCQHR
DPCISSPCKNGGSCHTVPRGNSVDSTCFCQPGFTDRLCLTPIDNACLSSPCRNGGTCDLV
NLREYKCRCPPGWSGKQCQEADPCASNPCANGGHCTPFESHYICSCTSFFYGQTCKQDVN
ECAQSPSPCQNGGVCVNEVGTYRCQCPQEYTGKHCDIRYLPCNPSPCHNGATCVQKGDTT
YECSCVPGFSGQNCDTNIDDCPGHECHNGGTCVDGVNTYNCQCKPEFTGQFCTEDVDECQ
LMPNACQNGGTCHNIYGAYQCVCVNGWTGDDCGENIDDCANAACYQGAICHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPLGYIGAACDQDVDECSLGG
NPCEHGGKCLNTMGSFQCKCQPGFSGARCEHDVNECLSNPCQNEATCLDQIGGFHCICMP
GYEGLFCQINTDECAYDPCLNNGKCIDKINTFHCQCPTGFAGNLCQIDIDECSSTPCKNG
AKCTDGPNKYTCECTEGYTGQHCETDINECFSDPCHYGTCKDGLASFTCYCRLGYTGRLC
ETNINECLSQPCRNGGICQDRENSYICTCPMGTAGINCEVNLDDCKSKPCDYGTCLDKIN
GYECACEPGYSGTMCNINLDECALNPCHNGGTCVDGINSFTCLCPEGYHDTTCFSQVNEC
LSNPCIHGHCQDKVNGYNCLCDNGWSGKNCDINNNECESNPCMNGGTCKDMTSGYVCSCR
IGFTGPSCQTNINECASNPCLNQGTCIDDVSAYKCNCLLPYTGENCETLLAPCKPKPCKN
GGECQETEDYESFSCVCPEGWQGQTCEVDINECVKNPCLNGATCENTKGNYHCSCKAGYA
GRNCETNIDDCKPNPCSNGGFCRDEVDNFACTCLPGFRGTKCEEDINECDSNPCKNGANC
TDCVNSYTCTCPPGFSGIHCENNTPDCTESSCFNGGTCVDGINTYTCLCPPGFTGSYCQH
DINECDSRPCLNGGTCQDSYGTYKCICLQGYTGLNCQNLVRWCDSSPCQNGGTCWQTGTT
YSCECQTGWTGLYCDVPSVSCEVAAKQRGVEVIALCRNSGQCLDAGNTHYCHCQAGYTGS
YCEEQVDECIPNPCQSGATCTDFLGGYSCKCVPGYVGTNCSNEINECFSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEINIDDCNPFTDPVTNEPKCFNKGKCVDRVGGYHCICPAGYV
GERCEGDVNECLSNPCDTRGTHNCVQLTNNYRCDCRTGYTGQRCDTVFDGCKSKPCRNGG
TCAVASNTPHGFICKCPPGYTGSTCEYDAHSCGSLHCRNGGTCISGHKSPKCLCPSSFTG
PECEYPTDSPCNTNPCYNGGTCEYSSEAPYYHCVCPTNFNGLLCHILDYSFLGGFGRDIT
PPPEVEVSCEIPQCEERKGNKFCDTLCNNHACGWDGGDCSLNFNDPWKNCTSSLQCWRYF
NDGKCDEQCNNAGCLYDGFDCQNLEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CANNMPEKLAVGRLVIVVHIMPDQLRNNSLGFLRELSRVLHTNVVFRQDSKGEMMIYPYY
GSEQELNKHNIKRSVGWTEIPGTMLSSMRNSLYTIASGNRRRRRELDPMLIKGSIVYLEI
DNRQCFQQSTECFQSATDVAAFLGALASSGNLNIPYIIEAVHSEVDPQPPSELYPIYAVL
AGLALLAFVGVGMVASRKRRREHGQLWFPEGFKISEPNKKKRREPVGEDSVGLKPLKNLS
DISLMDDNQNEWGEEEPSDTKRFRFEEQAILDLDGQTDHRQWTQQHLDAADLRIPSIAPT
PPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDASANVISDFIYQGANL
HSQTDRTGETALHLAARYARSDAAKRLLEASADANIQDNMGKTPLHAAVAADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDFGKSALHWAAAVNN
IEAATVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLEHFANREITDHMDRLPRDI
AQERMHHDIVRLMDEYNLVRSPPMHSHGHGGSMGTTLSPPLCSPNSYLGSMKPLVQSKKA
RKHSAKGIGCKDGKDMKNKKKTSQDGKGGSLLDSSAVLSPVDSLESPHGYISDVASPSMM
TSPFQQSPSMSLNHLQGMSDPHMGVNHMGMPNKQELARMQFDPLPPRLTHLPLSGSNCSG
GMNGQCDWLSRMHASMGQPGQFNPMRAGPVGGQGGLHQGSGQHGMMTSLHTGLPTTSLSQ
MLSYQGLQNTRLASQPHPMQQVQQQMQMQHQQNLQQQLQQQQQSIQLQHQNSSTGSSGHA
SNQNFISTELSGSEIQQGTGNQGSIPIHTILPQETQIMSQNLPSTQYLTPPSQHSYSGPM
DNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHSNMSDWSEGISSPPTSSMQSQIGHIPDQ
FK
NT seq
7569 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctttctttgtgaaactaactttcctgttgtcgctgattgttctaacacgaggt
ttaagatgctctatgtccaccgagttgtgtttgaaactggggaggtgtgaggccacagct
gatggaaatggagagtgcaagtgtcgggatggattcgtagggagcaagtgtcagcaccgg
gacccttgcatctcctctccatgtaaaaatggcggctcgtgtcacactgtaccccgtggg
aactcagtggactccacgtgtttctgccaaccgggcttcacggaccgcctgtgtctgacg
ccaatcgacaacgcttgtctcagctctccctgccggaacggtggcacctgcgatctggtc
aacctcagagagtacaagtgtagatgtccccctggctggtcaggtaagcagtgccaggag
gcagacccctgtgcctctaacccctgtgccaacggcgggcattgcacccccttcgagtcc
cactacatctgttcctgcacctccttcttctatggtcagacctgcaagcaggatgtcaat
gaatgtgcccagagcccctcgccctgccagaacggaggggtgtgtgtgaacgaggtgggc
acctaccgctgccagtgtccccaggagtacacaggcaagcactgtgatatccgctaccta
ccctgcaacccctccccctgccacaacggggccacctgcgtccagaagggagacaccacc
tacgaatgctcctgtgtgccaggtttctcgggtcagaactgtgacactaacattgacgac
tgtccaggacacgagtgtcacaatggaggaacctgtgtggacggagttaacacctataac
tgccaatgcaaaccagaattcacaggccagttctgtacagaggacgttgacgagtgccaa
ctgatgcccaacgcgtgccagaacggtggaacgtgccacaacatctacggtgcctaccag
tgtgtgtgtgtcaacgggtggacgggtgatgactgtggagagaatattgacgactgtgcc
aatgccgcctgctatcagggtgccatctgccatgaccgtgtggcgtccttcttctgcgag
tgtccccatggtcgcacaggtctgctgtgtcacctggatgacgcctgtatcagtaacccc
tgtcagaaaggctctaactgtgacaccaaccccgtcaacggcaaggccatctgcacctgt
ccccttggctacattggcgccgcttgtgaccaggatgttgacgagtgctcactaggtggc
aacccctgtgagcatggagggaagtgcctgaacaccatgggttcgttccagtgtaagtgt
cagcccggcttctctggagctcgctgtgaacacgacgtcaacgagtgcctctccaacccc
tgccagaacgaagccacctgcctcgaccagataggaggtttccactgcatctgtatgcca
ggctacgagggactgttctgccagatcaatactgacgagtgcgcctacgacccctgcctg
aacaatgggaaatgtatcgacaagatcaacaccttccactgccagtgccccacaggcttt
gctgggaacctttgccagatagatattgatgagtgctccagcacgccttgcaagaatggc
gccaagtgcacggatggccccaataagtacacctgtgaatgcactgaaggttacacgggg
caacactgtgagactgacatcaatgagtgtttctcggacccctgtcactatggtacttgt
aaggatggcctggcctccttcacctgctactgccgccttggttacacgggccggctgtgt
gagaccaacattaacgagtgtctgagtcagccctgtcggaacggaggcatctgccaggac
cgcgagaactcctacatctgcacctgccccatgggcaccgcaggtataaactgtgaagtc
aacctggacgactgcaagagcaagccatgtgactacgggacatgcctcgacaagatcaat
ggctacgagtgtgcctgtgagcccggctacagcgggaccatgtgcaacatcaaccttgac
gaatgtgccctcaacccatgtcacaacggtggcacctgtgtcgatggcatcaacagcttc
acctgtctgtgtccagagggttaccatgacaccacctgcttctcccaggtcaatgagtgc
cttagcaacccgtgtatccatggccactgtcaggacaaagtcaatggttacaactgtctg
tgtgacaatggctggagtggcaagaactgtgacatcaacaacaacgagtgtgagtccaac
ccctgcatgaacggaggcacctgcaaggatatgacgagcggatatgtctgttcctgcaga
atcggcttcactggtccaagctgtcagaccaacattaacgaatgtgcctccaatccctgc
ctgaaccaagggacctgcatcgatgatgtctctgcgtacaagtgcaactgcctactgcca
tataccggtgagaactgtgagaccctgctagcaccctgcaaacccaagccctgcaagaac
ggaggtgagtgtcaggagactgaagactacgagagcttctcctgtgtgtgtccagagggc
tggcaaggacagacctgtgaagtggacattaacgagtgtgtgaagaacccctgtctcaat
ggggccacctgtgagaacaccaaaggcaactaccactgtagctgcaaggccggctatgct
ggccgcaactgtgagaccaacattgacgactgtaagcccaacccctgcagcaatggaggt
ttctgtcgggacgaggtggacaactttgcgtgcacctgcctgcctggtttccgtggcact
aagtgtgaggaggacatcaacgagtgtgacagtaacccatgtaagaatggagccaactgt
accgactgtgtcaacagctacacctgcacctgtccacctggcttcagtgggatacactgt
gagaacaacacacctgactgcactgagagctcttgtttcaacggtgggacgtgtgtggac
ggcatcaatacctacacctgcctgtgcccacctggcttcactggcagctactgccaacac
gacatcaacgagtgtgactccaggccctgcctgaacggaggcacctgccaggacagctat
ggcacctacaagtgcatctgtctccagggctacactggactcaactgccagaatctggta
cgctggtgtgactcgtccccctgtcagaacgggggcacctgttggcagactggcactact
tacagctgtgagtgccagactggctggacagggctctactgtgatgtgccaagcgtctcc
tgtgaggtggcagccaaacagagaggtgtggaggtaattgctctgtgtcgtaactcaggc
cagtgtctggatgcggggaacactcactactgccactgccaggcaggctacacaggcagc
tactgtgaagagcaggtggatgagtgcatccccaacccctgtcagagcggagccacctgc
actgacttcctaggagggtactcctgcaagtgtgtgccgggatacgtcggcaccaactgc
tccaatgagatcaatgagtgtttctcccagccgtgccagaacggaggcacctgcattgac
ctgatcaatacctacaaatgctcctgtcccaggggaacccaaggcgttcactgtgagatc
aacatagacgactgcaaccccttcacagaccccgtcaccaacgagcccaagtgcttcaac
aaggggaagtgtgtggacagggtgggaggttaccactgtatctgtcccgccggctacgta
ggggagcgctgtgagggtgacgtcaacgagtgcctgtccaacccatgtgacacccgcggg
acacacaactgcgtccagctcaccaacaactaccgctgtgattgccgtaccggatataca
ggccagcgttgtgacacagtgtttgacggctgtaagagcaaaccctgtcgtaacggaggg
acatgtgccgtagccagcaacactcctcacggcttcatctgcaagtgtccacctggctac
actggctctacctgtgagtacgatgcccactcatgtgggagtctccactgccgtaatggt
ggcacctgcatctccggacacaagagccccaagtgtctctgtccctcctcgttcacgggg
ccagagtgtgaataccctacagacagcccctgtaacaccaacccctgctacaacggggga
acctgtgagtacagctcagaggctccatactaccactgcgtatgccccaccaacttcaac
ggcctgctatgtcacatcctggactacagcttcctgggtgggttcggccgtgacatcacg
cccccgccagaggtggaggtgagctgtgagatcccccagtgtgaggaaagaaaggggaac
aagttctgtgataccttgtgtaacaaccacgcgtgtggctgggacgggggcgactgctcg
ctcaacttcaacgacccgtggaagaactgcacgtcgtccctgcagtgctggcgttacttc
aatgacgggaagtgtgacgagcagtgcaacaacgccggctgtctctacgatggctttgac
tgtcagaacctggagggccagtgcaaccctctgtacgaccagtactgtaaagaccactat
gcggacggccactgtgaccagggctgcaacaacgctgagtgtgagtgggatggtctggac
tgtgctaacaacatgccagagaagctggcggtgggccgcctggtcatcgtggtgcacatc
atgcccgaccagctccggaacaactcgcttggcttcctgcgcgagctgagccgcgttctc
cacaccaacgtggtgttccggcaggactccaagggagagatgatgatctacccgtactac
ggcagtgagcaggagctgaacaaacacaacataaagcgctcagtgggttggacagagatc
cctggcaccatgctcagctccatgaggaatagcctgtatactatagccagtggaaacaga
cgcagacgcagggagctggaccccatgctgatcaaaggctccatagtgtacctggagatt
gacaaccgccagtgctttcagcagtccacagagtgcttccagagtgccactgatgtagca
gccttcctgggggccctggcctccagtggaaacctcaatattccctacatcatagaggct
gttcacagtgaggttgacccccagcctccgtctgagctttaccccatctacgcggtcctg
gctgggctggccctcctggctttcgtgggtgtggggatggtcgcctcacggaagcgtcgt
cgcgagcacggccagttgtggttcccggagggcttcaagatcagtgagcccaacaagaag
aagaggagggagccggtgggggaggattcagtgggattgaagccactgaaaaacctctcg
gacatatcactgatggacgacaaccagaatgaatggggagaagaggagccttcggacacc
aagcgctttaggtttgaggagcaggcgatactggacctggatggccagacagaccaccgc
cagtggacccagcagcacctggacgcagctgatctccgtatcccctccatcgcccccaca
ccccctcagggcgagatcgagaatgactgcatggacgtcaacgtacggggaccagatggc
ttcacccccctgatgatcgcctcctgtagcggtggaggtctggaaacaggaaacagcgag
gaggaggaagacgcctctgccaacgtgatcagtgatttcatttaccagggtgctaacctc
cacagtcagacagaccgcacaggggagaccgcccttcatctcgctgcccgctacgcccgc
tctgatgctgccaagcgtcttctggaggccagtgcagatgccaacatccaggacaacatg
ggcaagaccccgttacacgctgccgtggccgctgatgcgcagggcgtcttccagattttg
atcaggaatcgtgccacagacctggatgcccgcatgcacgatggcaccacccctctgatc
ctggcagcccgcctggcagtggagggcatggtggaggagctcatcaactgccatgctgac
gtcaacgctatcgatgactttggcaaatctgctctgcactgggcagcagcagtgaacaac
attgaagcagctaccgtactactgaagaatggagccaacaaggacatgcagaacaacaag
gaggagacccctctgttccttgctgcaagggaaggaagctacgagacggccaaggtcctg
ctggagcactttgctaaccgcgagataactgatcacatggaccggctgccccgagacata
gcgcaagagaggatgcaccatgacattgtccgtctcatggacgagtacaacctggtccgc
agcccgcccatgcacagccatggccatggaggctccatgggcaccactctgtccccccct
ctctgctcccccaacagctacttgggcagcatgaagcccttggtccagagcaagaaggcc
cgcaagcacagcgccaagggcatcggctgcaaggacggcaaggacatgaagaacaagaag
aaaacctcccaggatgggaagggaggaagtctgttggacagctcagctgttctgtccccc
gtggactccctggagtctccacacgggtatatctctgacgtggcgtccccttccatgatg
acgtcccccttccagcagtccccgtccatgtcactcaaccacctccaggggatgtccgac
ccccatatgggggtcaaccacatgggtatgcccaacaagcaggagctagcgcgcatgcag
tttgacccgcttccgccccgtctcacccaccttccgttatcaggctccaactgctctggg
ggcatgaacggccagtgtgattggctctccaggatgcacgccagcatgggccagcccgga
cagttcaaccccatgagggctggtcctgtcggggggcagggcggtctgcaccaaggaagc
gggcagcacggcatgatgacctctctccacaccgggcttcccaccaccagcctgtcccag
atgttgagctaccagggcctgcagaacacccggctggcctcgcagccccaccccatgcag
caggtccaacagcagatgcagatgcagcaccaacagaacctacaacagcagctccaacag
cagcaacagagcatccagctgcagcaccagaactctagcactggcagcagtggccatgcc
agcaaccagaacttcatcagcaccgagctgagtggctcagagatccagcagggcacaggg
aaccagggctccatacccatccacaccatcctgccccaggagacccagatcatgagccag
aacctgcccagcacccagtacctcacccctccctcccagcacagctactccggccccatg
gacaacacccccaaccaccagctacaggtccccgaccacccctttctgaccccctccccc
gggtctcccgaccaatggtccagctcatccccgcattctaacatgtctgactggtcggag
ggcatctcaagtccaccaaccagcagcatgcagtctcagatcggacatatccccgatcag
ttcaagtag
DBGET
integrated database retrieval system
