Candidatus Schneideria nysicola: KEC38_00960
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Entry
KEC38_00960 CDS
T07486
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
sny
Candidatus Schneideria nysicola
Pathway
sny00540
Lipopolysaccharide biosynthesis
sny01100
Metabolic pathways
sny01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
sny00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
KEC38_00960 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sny01005
]
KEC38_00960 (rfaD)
Enzymes [BR:
sny01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
KEC38_00960 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
sny01005
]
Core region
KEC38_00960 (rfaD)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
ThiF
Motif
Other DBs
NCBI-ProteinID:
UAJ66236
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Position
190769..191725
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AA seq
318 aa
AA seq
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MIVVTGGAGFIGSNIIATLNTMGYSDILVVDNLKNGIKYLNLVDLNITDFLDKWDFFNRI
FYKNIFRKIDVVFHEGACSVTNEWNGRYMMKNNYQFSKNLLHFCVKYRIPFIYASSAAIY
GNGSKDFIEEPQHERPLNIYGYSKYLFDQYVRVILPKVRSQICGLRYFNVYGPRESHKST
MASIIYHIYKQMISNQDIQLFIGSENFQRDFIHVSDIVSINLFCWRNNISGIFNCGTGIA
ESFQNVAEIILKNFNRSIDTIRFIPFSKNMSRKHYQTFTKANLNKLKETGYNKPFKTIKE
GIPLYTTWLNQNKDILFD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgattgttgtaactggtggagcaggttttattggtagtaatatcattgcgactttaaat
acaatgggatatagcgatatcttagtagtagataatctgaaaaatggcatcaaatattta
aatcttgtagatttaaatattacagattttttagataaatgggattttttcaatcgtatt
ttttataaaaatatttttagaaaaatcgacgtagtatttcatgagggtgcctgttcggtt
acaaatgaatggaatggcagatatatgatgaaaaacaattatcaattttctaaaaattta
ttacatttctgtgtaaaataccgcatcccctttatatatgcttcctctgctgctatatac
gggaatggtagtaaggattttattgaggagccacaacatgaaagaccattgaatatttat
ggatattccaaatatttatttgatcaatatgttcgagtcatcttacccaaggtacgatca
caaatttgtggtctacgttattttaacgtttatggaccgagagaaagccataaatctact
atggcaagtataatatatcatatttataaacaaatgatatctaatcaagatatccaatta
ttcattggcagcgaaaattttcaaagagatttcatacacgtaagtgatatagtatctatc
aatcttttttgctggagaaataatatctctggaatatttaattgtggaacgggtatagcg
gaatccttccaaaatgtagcggagatcattttaaaaaattttaatagatcgatagatact
attcgttttattccattttcaaaaaatatgtcacgtaaacattatcaaacttttacaaaa
gccaatttaaataaattaaaagaaacggggtataataaaccgtttaaaacaattaaagag
ggaattcctctttacacaacgtggttaaatcaaaataaagacatattattcgattga
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