Streptomyces nigra: DC008_25950
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Entry
DC008_25950 CDS
T05839
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
snz
Streptomyces nigra
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snz03009
]
DC008_25950 (rimO)
Enzymes [BR:
snz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
DC008_25950 (rimO)
Ribosome biogenesis [BR:
snz03009
]
Prokaryotic type
ribosomal protein modification factors
DC008_25950 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
AWE52793
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All DBs
Position
5591747..5593216
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AA seq
489 aa
AA seq
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MPERRTVALVTLGCARNEVDSEELAGRLEADGWDLVEDAADADVAVVNTCGFVDAAKKDS
VDALLEANDLKGHGRTQAVVAVGCMAERYGKDLAEALPEADGVLGFDDYADISDRLQTIL
SGGIHAAHTPRDRRKLLPISPAERQESAAGVALPGHAPVDLPDGLAPASGPRAPLRRRLD
GAPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSENNT
SYGKDLGDIRLLESLLPELAEVDGLERVRVSYLQPAEMRPGLIDVLTSTPKVAPYFDLSF
QHSAPDVLRAMRRFGDTDRFLELLDTIRAKAPQAGVRSNFIVGFPGETEADLAELERFLN
GARLDAIGVFGYSDEEGTEAATYDGKLPEDVVAERLARVSRLAEELVSQRAEERLGETVH
VLVESIDEDGVYGRGAHQAPETDGQVLLTSGAGLSIGRMVEAKVVGTEGVDLVAEPLDGA
LSCSEEAGR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacgccgtaccgtcgcactggtcactcttggctgcgcccgcaacgaggtggac
tcggaggagctcgcaggccgcttggaggcggacggctgggacctcgtggaggacgccgcc
gacgcggacgtcgccgtcgtcaacacctgcggcttcgtcgacgccgccaagaaggactcc
gtcgacgccctcctggaggccaacgatctcaagggccacgggagaacccaggccgtcgtg
gcggtgggctgcatggccgagcggtacgggaaggacctcgccgaggcccttcccgaggcc
gacggcgtgctcggcttcgacgactacgccgacatctccgaccgcctgcagaccatcctg
tccggcggcatccacgccgcccacaccccgcgcgaccggcgcaagctcctgccgatcagc
ccggccgaacggcaggagtccgctgccggtgtcgcactgcccgggcacgcccccgtcgac
cttccggacgggctcgccccggcctccggtcctcgcgcgcccctgcgccgccgtctcgac
ggcgccccggtcgcctcggtgaagctggcctccggctgcgaccggcgctgctcgttctgc
gccatcccgtccttccgcggctccttcatctcgcgccgcccgagcgacgtgctgaacgag
acgcggtggctcgccgagcagggcgtcaaggagatcatgctggtctccgagaacaacacc
tcgtacggcaaggacctcggcgacatccgtctgctggagtccctgctgcccgagctcgcc
gaggtcgacggtctcgagcgcgtccgcgtcagctatctgcagccggccgagatgcggccc
ggcctgatcgacgtcctcacctcgacgccgaaggtcgccccctacttcgacctctccttc
cagcactccgcgcccgacgtgctgcgcgcgatgcgccgcttcggcgacaccgaccgcttc
ctggagctgctggacaccatccgcgccaaggcgccccaggccggtgtgcgctccaacttc
atcgtgggcttccccggcgagaccgaggccgacctcgccgagctggagcgcttcctgaac
ggcgcccggctcgacgcgatcggcgtcttcggctactccgacgaggagggcaccgaggcc
gccacctacgacggcaagctgcccgaggacgtcgtcgccgagcggctggcccgggtgtcc
cggctggccgaggagctggtctcccagcgcgccgaggagcgcctcggcgagaccgtgcac
gtgctggtcgagtccatcgacgaggacggcgtgtacgggcgcggtgcgcaccaggcgccg
gagacggacggccaggtgctgctcacgagcggcgcgggcctgagcatcggtcgtatggtc
gaggcgaaggtggtcggcaccgaaggtgtcgacctggtggccgaacccctcgacggcgcg
ttgtcgtgtagtgaggaggcgggcagatga
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