Shewanella oncorhynchi: RA178_00105
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Entry
RA178_00105 CDS
T09381
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog00071
Fatty acid degradation
sog00280
Valine, leucine and isoleucine degradation
sog00310
Lysine degradation
sog00362
Benzoate degradation
sog00380
Tryptophan metabolism
sog00410
beta-Alanine metabolism
sog00640
Propanoate metabolism
sog00650
Butanoate metabolism
sog00907
Pinene, camphor and geraniol degradation
sog00930
Caprolactam degradation
sog01100
Metabolic pathways
sog01110
Biosynthesis of secondary metabolites
sog01120
Microbial metabolism in diverse environments
sog01200
Carbon metabolism
sog01212
Fatty acid metabolism
Module
sog_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RA178_00105 (fadB)
00650 Butanoate metabolism
RA178_00105 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
RA178_00105 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RA178_00105 (fadB)
00310 Lysine degradation
RA178_00105 (fadB)
00380 Tryptophan metabolism
RA178_00105 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RA178_00105 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
RA178_00105 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RA178_00105 (fadB)
00930 Caprolactam degradation
RA178_00105 (fadB)
Enzymes [BR:
sog01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
RA178_00105 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
RA178_00105 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
RA178_00105 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
RA178_00105 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
WMB73080
UniProt:
A0AA50KD05
LinkDB
All DBs
Position
complement(22788..24938)
Genome browser
AA seq
716 aa
AA seq
DB search
MIYQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQNSNIKALVLTSS
KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCET
ILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGNDQRAEDALK
VGAVDAVVAPEALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLEAMMSFTTAKGMV
FAVAGKHYPAPMAAVSVIEQASTKGRTEALQIEHQAFIKLAKTDVAKALIGIFLNDQFVK
GKAKKAGKLAKEVKNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALDLGLNEAAKLL
SAQVARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKIKAQVLAEVEGYVSE
DAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSRGKP
KKDVDPTSYGLLKAAFGELKAFEADDIIARTMIPMIIETVRCLEESIVASPAEADMGLVY
GLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGGLYQVTDAMRTLAANNGSYYQA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaagtcctacaattcaagttgagttactcgaggataatattgccaagctg
tgctttaacgcacccggttcggtgaacaaattcgacagagaaaccctcgcttcgctcgat
gccgcattagacagcatcaagcaaaattccaatatcaaagcgttagtgctgacctcaagt
aaagatacctttattgtgggtgccgacattaccgaatttttaggcctattcgcacaagat
gacgccgtactgctctcttgggttgaacaagccaacgctgtcttcaacaaactcgaagac
ttacctttcccaacagcatctgcaatcaaaggctttgccttaggtggcggctgtgaaacc
attctggcaacggattttcgtatcgcagataccacagccaaaatcggtttacctgaaact
aaactcggcatcatcccaggctttggcggcacagttcgtctgccacgtgtgattggtgca
gataacgcacttgaatggatcaccacaggtaacgaccaacgcgctgaagatgcactgaaa
gtcggtgctgtggatgctgtggttgcgccagaagcattagaagcggctgcgattcaaatg
ctcaaagatgctgttgctgaaaagttggattggcaagcgcgtcgtaaccgcaagctgtct
gcactaacactgccaaaacttgaagctatgatgtcattcaccacagctaaaggcatggtg
tttgctgttgcgggtaaacactaccctgcaccaatggccgcagtaagcgtgattgagcaa
gcatcgactaaaggccgcaccgaagcactccaaatcgagcatcaagcctttatcaaactg
gctaaaactgacgtagctaaagcgcttatcggtatcttccttaatgatcaattcgttaaa
ggcaaagcgaaaaaagcgggtaaattagccaaagaagtgaaaaacgctgccgtattaggt
gctggtattatgggcggcggtatcgcctaccaaagcgccagcaaaggcacaccgattgtc
atgaaagacattgcccagccagcattagatttaggcctcaatgaagccgccaaactgctg
tctgcccaagttgctcgtggtcgttcaacgccagaaaaaatggccaaagtgctgaacaac
atcacgccttcattagattatgctgcgctcaaacacagtgatgtcgtcgttgaagccgtt
gttgaacatccaaaaattaaagcacaggttttagccgaagttgaaggctatgtgagtgaa
gatgcaattatcgcgtcaaacacctcaacgatttcaatcaacttgctcgctaagagcatg
aagaaacctgagcgtttctgcggtatgcatttcttcaacccagtgcacaaaatgccgttg
gtagaagttatccgtggtgagcacagttctgaagaaaccatcgcctctgttgtggcttac
gccagcaaaatgggcaaaaccccaatcgtggtaaacgattgcccaggcttcttcgttaac
cgcgtactcttcccttactttgcaggctttaatggcttacttgccgaaggtggcgacttt
gctgcaatcgacaaggtaatggaaaaacaattcggttggccaatgggccctgcttacctg
ctcgacgtagtgggtttagacacaggtcatcacgcccaagccgttatggctgaaggtttc
cctgatcgaatgggtaaatcaggcactgatgcgattgatgtgatgtttgagaacaaacgt
cttggccagaaaaatggcaaaggtttctatgtctattccgtcgatagccgtggcaagccg
aagaaagatgtcgatccaacaagctacggtctattgaaagctgcctttggcgagttaaaa
gcctttgaagccgatgacattattgctcgtactatgatccctatgatcatcgaaaccgtg
cgctgtttagaagaaagtattgtcgcatcaccagccgaagcggatatgggcctagtttat
ggcttaggtttcccgccattcagaggcggcgtgttccgttatttggataccatgggtgtc
gcaaactttgtagccttagcagacaaatatgctcacttgggcggtctgtatcaagtcaca
gatgcaatgcgtacattagcagccaataacggtagctactaccaagcctaa
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