Shewanella oncorhynchi: RA178_03290
Help
Entry
RA178_03290 CDS
T09381
Name
(GenBank) GGDEF domain-containing protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
sog
Shewanella oncorhynchi
Brite
Enzymes [BR:
sog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
RA178_03290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF_2
GAF
TPD
Motif
Other DBs
NCBI-ProteinID:
WMB73663
UniProt:
A0AA50KEH7
LinkDB
All DBs
Position
complement(725600..727540)
Genome browser
AA seq
646 aa
AA seq
DB search
MPYNLAINQSQKDRLFADIAIDTDKIVVPQEMVDNWQQTLDLLSELVDTPAALIMRVHQT
DIEVFTSSRTQGNPYKKHDKDSLGHGLYCETVIKEGKELHIPNALKDKNWDKNPDIKLGM
IAYCGLPLRWPDSSAFGTICMLDSQEHNYPQSFRSLLARFQNGIEANLVTLYQQAKLQLH
NQQLEQKVQQRTHELAELSGKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLSI
MLEKVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYTDENTFIARIAGA
EFVIIQAHKPSNNETNKLINKVLNCCNTPFGVADFVITIPSSMGIAQAPMDGIDAAILLQ
KAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDALNKNELSLHYQPFINLKTKQ
VIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNFVLHTALSQAAKWCREVGQEFK
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELG
IRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFISKLEENEQNRELTKAIIAIGKKLDLEV
IAEGVETLEQDAFIRHEECDLGQGYLYGKPITATQFEQAFIHKKEH
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgccatacaacctcgccattaaccagtctcaaaaagatcgtttatttgccgacattgct
atcgacacagacaaaatcgttgttccccaagaaatggttgataactggcaacaaacctta
gatttgctctctgaattagtcgacacccccgccgctttgatcatgcgtgtccatcaaacc
gatattgaggtctttacctcgagccgcacccaaggtaatccctataaaaaacatgataaa
gacagtttaggccacgggctttactgcgaaacagtgatcaaagaaggtaaggaactccac
attcctaacgccctaaaggataaaaactgggacaaaaatcctgacattaaactcggcatg
atcgcatactgtggtttacctttacgttggccagatagcagtgcctttggcactatctgc
atgctcgatagccaagagcataattacccccaatcttttcgcagcttactcgctcggttt
caaaatggtatcgaagctaacctagtcaccctttatcaacaggctaagctacaactgcac
aatcagcagctagagcaaaaagtacaacagcgcacccatgaactcgccgaacttagcggc
aagctcatcaaagaaatcgaaaaccgcacctccaccgaaacctcactggaataccataaa
agctatgatccactgacgggattacccaatcgcatcaatttgattaatagtctgtctatc
atgctcgaaaaagtgaatcgcaaagaaaagatttcagtactctatcttgggctgcgcaat
ttcaaatccatcaacgacagttatggttacctgattggcgataaaattctcactattctc
agccaacgtttacagcactataccgatgaaaacacctttatcgcccgcatcgctggcgcc
gaatttgtgattattcaagcccacaaaccttcgaataacgaaaccaataaactcatcaat
aaagtgcttaactgctgtaacacgccctttggtgtggctgattttgtaatcacgattccc
tcgagcatgggcatagcacaagcgcctatggatggtatcgatgccgccatcctgctgcaa
aaagccggagcggccatgacgatcagcaaggctgatggctcaactcacagcttctttaat
caagatacgcaagccgctttaaacctacgctatcaactggaatcccacttggtcgatgca
ctgaacaagaacgagttaagcctgcattaccaaccctttattaacttaaagacgaagcaa
gtgattggtgccgaagccctgctgcgctggcataatcccatccttggcaatgtcgcccca
gacagattcatcgccttagctgaacgtaatggccagattattgatattggcaattttgta
ttgcataccgcgctgtctcaggcggcaaaatggtgtcgcgaggtaggccaagagtttaaa
atcgccatcaatatttcccctttgcaaatgcgcaatccccgctttagcgaacacatagcc
gacttactcaccctctatcaattgccacccaccgccttagaacttgaaattaccgaaggc
atgctgatgcaggatgaacatattgcccacaatgccatccaaaaactacaagaactcggt
atccgcatctccctagatgattttggcacaggctactcatccttaagttatctacaaaaa
tactctttcgacaccttaaaaatcgatcgctgctttattagtaaactcgaagaaaacgaa
caaaatagagagttaacaaaggcaattattgccattggtaagaaactggacttggaagtg
atcgccgaaggcgtagaaaccctagaacaagatgcctttattcgccacgaggaatgcgac
ttaggccaaggctacctctacggtaaacccattaccgcaacacagtttgagcaggcattt
atccataaaaaagagcattaa
DBGET
integrated database retrieval system
