KEGG   Schizosaccharomyces osmophilus (fission yeast): SOMG_03854
Entry
SOMG_03854        CDS       T09274                                 
Symbol
rpb9
Name
(RefSeq) DNA-directed RNA polymerase II complex TFIIS subunit Rpb9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
som  Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03020  RNA polymerase
som03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:som00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SOMG_03854 (rpb9)
  09124 Replication and repair
   03420 Nucleotide excision repair
    SOMG_03854 (rpb9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:som03021]
    SOMG_03854 (rpb9)
   03400 DNA repair and recombination proteins [BR:som03400]
    SOMG_03854 (rpb9)
Transcription machinery [BR:som03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     SOMG_03854 (rpb9)
DNA repair and recombination proteins [BR:som03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      SOMG_03854 (rpb9)
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD Elf1 DUF3716 DZR GpA_ATPase
Other DBs
NCBI-GeneID: 80877330
NCBI-ProteinID: XP_056038384
LinkDB
Position
2:join(2997338..2997378,2997436..2997502,2997635..2997684,2997741..2997873,2997929..2997979)
AA seq 113 aa
MSNFQYCIECNNMLYPREDKVTRILRLACRNCDYSEVAASSKVYRHELMTSNVEGLHFSQ
DAATDYTLPRTEKECPRCHHHEAVFYQMHSRRGDSRMTLVYVCAGCGFAYEDQ
NT seq 342 nt   +upstreamnt  +downstreamnt
atgtcaaattttcaatattgtattgagtgtaacaacatgctatatccaagagaggataaa
gtcaccagaattcttcgattagcctgcagaaattgtgactattcagaggttgctgccagt
agcaaggtctatcgacatgagttgatgacatcgaatgtcgaaggtcttcatttctctcaa
gatgctgcaactgattacacccttccacggactgaaaaagaatgtcctcgttgtcaccat
catgaagccgttttctaccagatgcattcacgccgcggcgattcaagaatgacgttggta
tacgtgtgcgcaggttgcggttttgcatacgaggatcaataa

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