Schizosaccharomyces osmophilus (fission yeast): SOMG_04760
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Entry
SOMG_04760 CDS
T09274
Symbol
msh6
Name
(RefSeq) MutS protein-like protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SOMG_04760 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_04760 (msh6)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
SOMG_04760 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_14
AAA_27
AAA_29
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
80878227
NCBI-ProteinID:
XP_056039714
LinkDB
All DBs
Position
3:join(1606561..1607184,1607235..1610441)
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AA seq
1276 aa
AA seq
DB search
MSKGRVEKVQGNEQIEPIKSKQRTLFGFFSKIPTPKKESPSSSIPLQKSSASPTAGGTGD
AKRKPLQSQENELPVRIPEESLQNTFSSHPSSDPFSSPLSSNVQRSSPKRPLDSYEDGNT
PKNVNGKLLRTSEHMDTAVHSPPRDNDSDVSLDSPTKNKSQNIELDSSLQSDPQFFPSSH
LTLSSSSTTHEDPEKKSNPQSGGRRSRKPVSYQESDEEDAVLADVKGSRANRRRKIVLDD
DDADFEEYVEPEQENEASSDESIPAKEEIPEDDLMDEENEEMDDDDHNPPLAAPKPVNRS
KPSKSMYENYRLGSNLASADLPSPRSASPSKATASGVMNREEKRRLRMEAFKKDNLERYE
WLLDVRDADKNRPGDPNFDPRTLYIPPSAWSSFKPFEKQFWEIKKNLMDTVVFFQKGKFY
ELYENDAAIGHQIFSLKLTDRVNMKMVGIPEASFDYWASQFVAKGYRIARVDQLETALGK
EMKDRQRTQKEEKVVQRGLTQVLTSGTLVDEAMLTSDLSTYCMAIKELIRFDSDEPSFGI
CFIDTSTGGFQLCEFTDDIHRTKLDTLLTQTRPRELILEKSEVSQKSMKVMKYCVSSAAI
WNFIKPYTEFWDKERVIREIISANYFENGLKEAPKVLSRVLETKELASSAFGALVWYLRQ
LKMDKDMCSMGNFMEYDTSQHSTSLLMNGQTLKNLEIFSNSFDGGDKGTLFSLLCRCVTP
FGKRLFHTWLCHPLRSPVAINARLDVIELIADNPSIRDTIWGFMHKLPDLERLISRVHAG
RSKASDFVRVLEGFQKISLAFQQLQSEFQDIAKGTLLAQLIENAPDMQEELQSWTRAFNW
RKASEEGVFVPEPGFEAEYDQSQQYQTELKSELYELLEQYKKQLRCSSLNFKHVGKEVYQ
IEVPSDVKVPVNWCKMSGTKKANRYYNDDLRKKIRKLLEAEEVHLSIMSRMQDKFYTRFD
GNYEKWLALIKCTASIDCFFSLSQAAAALGEPYCRPEIVEGDKGELVFDELRHPCINATA
AATFVPNDVTLGGNSANMVVLTGPNMAGKSTLLRQVCVAVIMAQLGCWVPAKYARLTPMD
SIHTRLGANDDIMSARSTFMVELSETKKIIEETGPKSLVILDELGRGTSTHDGHAIAYAV
LHHLVSKLGCLGFFSTHYQSLCIDFIKYKQVRLMQMAAAVDEEHRRVTFLYKLEDGICPK
SYGMNVANMAGLPEAVIDAAEQKAEDMEATTKSFHKATDDIALVSDFFQLMRINEGKEPS
TMANLPLMLDCIAGDN
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagggaagagtggaaaaagtacaaggaaatgagcaaattgaaccaataaaatca
aaacaaagaactctttttgggtttttctccaaaatcccgactcctaagaaagagtctcca
tcttcctccatacctttgcaaaagtcttccgcgtcgccaactgccggcggtaccggcgac
gccaaacggaaaccattacagagtcaagagaatgaattgcctgttcgtattcccgaagaa
tcccttcaaaacactttttcgtctcatccatctagtgatcccttttcgtctccattgtcg
agtaacgtacagcggtcctcaccaaagaggcctttggattcgtatgaggatgggaacact
cccaagaatgtgaatggaaaattacttcgaacttcagaacacatggatactgctgttcat
tcccctccccgtgacaacgactctgatgtttccttggattcccccaccaaaaataagtca
caaaatattgaattggattcctctttacagtcagaccctcaatttttcccttctagccat
ctcacgttatcttcctcttcaacaacacatgaagaccctgagaagaaatcgaatccccaa
agtgggggaaggaggtccagaaagcctgtgtcgtaccaagaaagtgacgaggaggatgca
gtattggcagacgtgaaaggatcaagagccaatcgtcgtagaaaaatagtacttgatgac
gacgatgctgatttcgaagaatatgtagagccagaacaggaaaatgaggcttcttctgat
gagtccattccagccaaagaagaaatacctgaagatgaccttatggacgaggaaaacgaa
gagatggatgacgatgatcataatcctccattggcagccccaaagccagtgaacagatca
aagccttcaaaatcaatgtatgaaaattatcgtttgggttcaaacttggcctctgcagat
ttaccttcccctagatccgcctctccctccaaggcaaccgcatctggtgttatgaataga
gaagaaaaacgaagattgcgcatggaagcctttaaaaaggataatctagaacgctatgaa
tggcttttagatgtgcgtgatgctgataaaaatcgtcctggtgatcccaactttgatcct
cgaactctttatattcctccttcagcctggtcgtctttcaaaccattcgaaaaacagttc
tgggaaatcaagaaaaatcttatggacactgtagtcttctttcagaagggaaagttctac
gagttatatgagaatgatgccgcaattggtcatcaaattttttctttgaaactcacggac
cgtgttaacatgaagatggtcggaattccagaagccagctttgactattgggcttcacag
tttgtggccaaaggctatcgtattgctcgtgttgatcagctcgaaactgctttgggtaaa
gaaatgaaggatcgccaacgaactcaaaaagaagaaaaggttgtacaacggggcttgaca
caggttcttactagtggcactctagttgatgaagctatgctaacatccgatctttccact
tattgtatggcaattaaagagctcattcgcttcgatagtgatgagccatcatttggcatc
tgttttatcgatacttctactggtggatttcaactttgtgaatttacggatgatatccat
agaacgaagcttgatactctgctgactcaaacgcgtccgagggagcttatcttagaaaaa
tctgaagtatctcagaaatctatgaaagtgatgaagtactgtgtttcttcagcagcaatt
tggaattttataaagccatatactgagttttgggataaagagagggttattcgagaaatt
atttctgcaaactattttgaaaatggactaaaagaagctcccaaagtactttcgagagtt
ttagaaaccaaagaactagcctctagtgcgtttggtgctttggtttggtatttgcgtcaa
ctgaaaatggataaagatatgtgctctatgggtaattttatggaatacgatacatcccaa
cattctacttctctccttatgaatggtcaaaccttgaaaaacttagagattttttctaat
tcatttgatggtggtgataaaggtacgctgttcagtcttttatgccgttgtgtaacacct
tttggaaagcggttgtttcacacatggttatgtcatcctttgaggtcacctgttgccata
aatgccaggttagatgtgattgaactaattgcagataatccttccattagagacacgata
tggggcttcatgcataaacttcccgatcttgagcgattaatatcgcgagtccatgctgga
agaagcaaggcaagtgattttgttcgtgtattagaaggattccaaaagatatctttagca
tttcaacaacttcagtctgaatttcaggatattgctaagggtactttattagcacaattg
atagaaaatgctcccgatatgcaagaagaacttcaatcttggacacgtgctttcaactgg
cggaaagcatcagaagaaggcgtgtttgtcccagaacctggtttcgaagctgaatatgat
caatcccaacaataccagactgagctgaaatctgagctgtatgagctattagagcagtat
aagaagcagcttcgttgctcttctcttaatttcaagcatgtcggtaaagaagtgtatcaa
atagaggtaccttctgatgtcaaagtaccagtaaattggtgtaaaatgtcaggcacgaag
aaggcaaatcgctattataatgacgatttgaggaaaaaaattaggaagttactcgaagct
gaagaagttcatttgtcaattatgtcgcgaatgcaggacaagttctacacaagattcgat
ggtaattatgaaaaatggctagcattaatcaaatgtactgcttctatagattgctttttc
agtctttctcaggctgctgctgcgttgggtgagccctactgccgaccagaaattgttgag
ggtgacaaaggtgaattggtatttgatgagttaaggcacccatgcataaacgctacggct
gccgctacatttgtaccaaatgacgttacactaggtgggaattcagccaacatggtggtc
ctgactggtcccaatatggctggtaaatctacactgcttcgtcaggtgtgcgtagcagtc
atcatggctcagcttggctgttgggtacctgcgaaatatgctagattgactcctatggac
agtattcatacacgattaggtgccaatgatgatatcatgtcagctagaagtaccttcatg
gtggagttgtcagaaactaaaaaaataatcgaagaaactggaccaaagagtctagttatt
ttagatgagcttggacgtggtaccagtacgcatgacggtcatgcaatagcgtatgctgtt
ttgcatcatttggtgtccaagctcggttgtctgggatttttctccacacattatcaaagt
ctctgtatagactttataaaatataaacaagttcggcttatgcagatggctgcagctgtc
gatgaggaacatcgacgtgttacgttcctttataaattagaggatggtatttgtccaaag
tcttatggtatgaatgttgccaacatggctggattgccggaggcagttatcgatgcagca
gaacagaaggccgaagatatggaagcaacgacaaaaagttttcataaagcaacagatgac
atcgctctggttagtgatttctttcaattaatgcgtatcaatgaaggaaaagagccatcg
acgatggcaaatcttcccttgatgcttgactgtatagcaggagacaattaa
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