Shewanella oneidensis: SO_0021
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Entry
SO_0021 CDS
T00099
Symbol
fadB
Name
(GenBank) aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
son
Shewanella oneidensis
Pathway
son00071
Fatty acid degradation
son00280
Valine, leucine and isoleucine degradation
son00310
Lysine degradation
son00362
Benzoate degradation
son00380
Tryptophan metabolism
son00410
beta-Alanine metabolism
son00640
Propanoate metabolism
son00650
Butanoate metabolism
son00907
Pinene, camphor and geraniol degradation
son00930
Caprolactam degradation
son01100
Metabolic pathways
son01110
Biosynthesis of secondary metabolites
son01120
Microbial metabolism in diverse environments
son01200
Carbon metabolism
son01212
Fatty acid metabolism
Module
son_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
son00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
SO_0021 (fadB)
00650 Butanoate metabolism
SO_0021 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
SO_0021 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SO_0021 (fadB)
00310 Lysine degradation
SO_0021 (fadB)
00380 Tryptophan metabolism
SO_0021 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
SO_0021 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SO_0021 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SO_0021 (fadB)
00930 Caprolactam degradation
SO_0021 (fadB)
Enzymes [BR:
son01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
SO_0021 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
SO_0021 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
SO_0021 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
SO_0021 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AAN53108
UniProt:
Q8EKR9
LinkDB
All DBs
Position
complement(24493..26643)
Genome browser
AA seq
716 aa
AA seq
DB search
MIYQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQQSNIQALVLTSG
KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCET
ILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGNEQRAEDALK
VGAVDAVVAPEALEVAAIQMLKDAVAEKLDWQARRQRKLSPLTLPKLEAMMSFTTAKGMV
FSVAGKHYPAPMAAVNVVEQAATKGRSDALQIEHQAFIKLAKTDVAKALIGIFLNDQFVK
GKAKKAGKLAKAVNSAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALDLGLNEAAKLL
SAQVARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVVEHPKVKAQVLAEVEQYVSE
DAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYAYSVDSRGKP
KKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIETVRCLEEGIVASPAEADMGLVY
GLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGGLYQVTDAMRALAANNGSYYQA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaagtcctacaattcaggttgagttactcgaggataatattgccaagctg
tgctttaacgcacccggttcggtgaacaaattcgatagagaaacactcgcctcactcgat
gccgcattagacagcatcaaacaacaatcaaacattcaggcattagtgctcacatcaggt
aaagatacctttatcgtcggcgctgacattactgaatttttaggcttattcgcacaagat
gatgcagtactgctctcttgggttgaacaggccaacgccgtattcaataaactcgaagat
ttacctttcccaactgcttcagccattaaaggttttgccttaggcggcggttgtgaaacc
attttagcgacagatttccgtattgctgacaccacggcaaaaatcggcttacctgaaacc
aaactgggtattatcccaggctttggcggtactgtacgtctaccacgcgtgattggtgct
gacaacgctctcgagtggatcaccacaggcaatgagcagcgcgctgaagatgcattaaaa
gtcggtgccgttgacgccgttgttgcaccagaagccttagaagttgcggcgattcaaatg
ctcaaagatgctgtcgcagaaaagcttgattggcaagcgcgtcgccaacgcaaattatcg
ccactgacactgcctaaactcgaagccatgatgtctttcactacggctaaaggcatggtt
ttctctgtcgcaggcaaacattacccagcaccaatggcagcggtaaacgtagttgagcaa
gcagcaaccaaaggccgcagcgacgcattacaaattgagcatcaggctttcatcaagtta
gctaagactgatgtggccaaggcgcttatcggtatcttccttaatgatcaattcgttaaa
ggcaaagccaagaaagctggcaagctggccaaagcagtaaatagcgccgccgtattaggt
gcaggcatcatgggcggcggcatcgcttaccaaagcgccagcaaaggcacgccgatcgtg
atgaaagatattgcccagccagcattagatttaggtctcaatgaagcggcaaaactgcta
tcagcgcaagttgcccgtggccgctctacccctgaaaaaatggcaaaggtactgaacaac
atcaccccagctctagaatatgcaccagtgaaacatgccgacgtggttgttgaagccgtg
gttgagcatccaaaagtgaaagcacaggtactggcagaggttgaacaatacgtcagtgaa
gatgcgattatcgcttctaacacttcaacgatttcaatcagcttactcgctaagagcatg
aagaagccagagcgtttctgcggtatgcacttcttcaaccctgtgcacaaaatgccattg
gttgaagttatccgtggcgagcacagctcagaagaaaccatcgcatcagttgtcgcttac
gccagcaaaatgggtaaaaccccaatcgttgttaacgattgcccaggcttcttcgttaac
cgcgtcctcttcccttactttgccggctttaatggtctactcgccgaaggtggcgacttt
gctgctatcgataaagtgatggaaaaacaattcggctggccaatgggccccgcttatctg
ctagacgttgtcggcctagatacaggtcaccacgcgcaagcagtaatggccgaaggcttc
cctgatcgtatgggcaaatctggcaatgacgcgattgacgtgatgtttgagaacaaacgt
ctcggccaaaagaacggtaagggtttctacgcttactcagtggatagccgcggcaagcca
aagaaagatgtcgacccaaccagctatgagctgctgaaggccgcttttggtgagcaaaaa
gcattcgatgcggatgaaatcatcgcccgcactatgatcccaatgattatcgaaaccgtt
cgctgtttagaagaaggcattgtggcatcacctgccgaagcggatatgggcttagtctac
ggtttaggcttcccgccattccgtggtggtgtgttccgttacttagacaccatgggcgtt
gccaactttgtggctttagcagacaaatacgcgcatttaggtggtttgtatcaagtcacc
gacgccatgcgtgcccttgcagccaacaacggtagctactaccaagcctaa
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