Solanum tuberosum (potato): 102579213
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Entry
102579213 CDS
T02981
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102579213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102579213
Enzymes [BR:
sot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
102579213
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102579213
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
FtsK_SpoIIIE
ATP_bind_1
ABC_tran
AAA_24
AAA_29
DUF1611
Motif
Other DBs
NCBI-GeneID:
102579213
NCBI-ProteinID:
XP_006367862
UniProt:
M1CYZ7
LinkDB
All DBs
Position
Un
AA seq
439 aa
AA seq
DB search
MAYGGTNVNPLAATGGSTTVRQVKLEKECELRVEASADSPLRLRLLTGTAEIFGTEIPPG
IWLNFPPRLKFAVFTWYGATIEMDGSTETDYTADETPMISYINVHAVLDGRRNRAKASPS
DSDTSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAATP
IELPIDPVEGIPLEMPMVYFFGHVTPSANIDHYKVLVKELAQTLETQFSGNAESRASGMV
INTMGWIEGVGYELLLHAIDTFNATVILVLGQEKLCSMLKDVLKNRPNVDVVKLQKSGGV
VSRNAKVRQKARGYRIREYFYGPSNDLSPHSNVVNFSDLFIYRIGGGPQAPRSALPIGAE
PSADPTRLVPVSISRDLLHLVLAVSYAKEQDQIISSNVAGFIYVTDIDLHRKKITYLAPC
AGELPSKNLIVGTLTWIEN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggcacaaatgtcaatccattggcagcaacaggtggttcaacaacagtg
aggcaggtgaagctggaaaaagaatgcgagctccgagttgaagccagcgctgactcaccc
ctccgtcttcggctcctaactggcacggctgagatttttgggactgaaatccctcctgga
atctggctcaacttccctccaagacttaaatttgcagtttttacttggtatggagccaca
atcgagatggacggttccactgaaactgattatacagcagatgagacgccgatgataagc
tatattaatgtccatgctgtacttgatggacgaagaaatcgtgccaaagcttcgcctagt
gattctgacacttctcagggcccaagagttatcgttgtgggacctacagattctggcaag
agtactctgtcaaggatgcttcttagttgggctgcgaaacagggatggaaacctactttt
gttgatttggacataggtcaaggatcgataactattccaggatgtgttgctgctacacca
atcgagttgcctattgatccagttgaaggaattccacttgagatgcctatggtctacttc
tttggccatgtgactcctagtgccaacatagatcactacaaggtactcgtcaaggagcta
gctcagactttggagacacaattttctggcaatgctgaatctcgagcttcaggcatggta
ataaatacaatgggatggatagagggagttggttatgagttgctactccatgcgattgat
acattcaatgccacagttattcttgtcttgggtcaggaaaaactttgcagcatgctaaaa
gatgtattgaagaatcgacctaacgtggatgtggtgaaacttcaaaaatctgggggtgtt
gtatcaaggaatgcaaaagtacggcagaaagcaaggggctacagaatacgggaatatttt
tatggcccttcgaatgatctctcaccacattctaatgtggtgaacttcagtgacttgttc
atctatcgaatagggggtggaccacaagctccacgctcagctttacctattggtgcagag
ccttctgcagatcctacaagattggttcctgttagtatcagccgagatttgctccatttg
gttcttgctgtctcatatgccaaagaacaagatcaaataatttccagtaatgttgctgga
ttcatctatgtaaccgacatagacttacacaggaaaaagattacataccttgcaccatgt
gctggagaacttccgagcaaaaacctaatcgtgggaaccttaacatggatcgaaaactga
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