Sitophilus oryzae (rice weevil): 115885415
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Entry
115885415 CDS
T07985
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
soy
Sitophilus oryzae (rice weevil)
Pathway
soy03020
RNA polymerase
soy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115885415
09124 Replication and repair
03420 Nucleotide excision repair
115885415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soy03021
]
115885415
03400 DNA repair and recombination proteins [BR:
soy03400
]
115885415
Enzymes [BR:
soy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115885415
Transcription machinery [BR:
soy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115885415
DNA repair and recombination proteins [BR:
soy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115885415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
115885415
NCBI-ProteinID:
XP_030760186
UniProt:
A0A6J2YAC4
LinkDB
All DBs
Position
Unknown
AA seq
1897 aa
AA seq
DB search
MATSDSKAPLRTVKKVQFGILSPDDIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVI
DRHSRCQTCAGNMTECPGHFGHIDLSKPVFHVGFITKNIKILRCVCFYCSKLLVNPTNPK
IKEIIIKTKGQPRRRLAHVYDLCKGKNICEGGDEMDVSKDGEEQINNKKAGHGGCGRYQP
NIRRTGLDLRAEWKHINEDSQDRKIALTAERVWEILKHITDEECFILGMDPKFARPDWMI
VTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELQKNEAAGAAAHIITENTKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPEIVTPFNFEKMLELVQRGNSQYPGAKYIIRDNGERIDL
RFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEIENLHITPRQIITPQANKPVMGIVQDTLTAIRKMT
KRDVFINNEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQVFSLIIPGNVNMMRTHSTH
PDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFY
GNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQYLPTI
KLSNKTFEKKFRFDPSNERYLRRVFNEDVIKQLMGSGEVISELEREWEQLQKDREALRQI
FPSGDAKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPIRVIRGVRDLLARCIIVAGEDRL
SKQANENATLLFQCLVRSTLCTKAVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKF
GDAGGDEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQSDSKKRTVITETGE
FKSIAEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAE
VDPMRGVSENIILGQLPKMGTGCFDLLLDAEKCKLGIPIPQAHGGDIMSSGMFFGAAATP
SMSPSGAMTPWTQGSTPYVGSAWSPHNLLGSGMTPGGPAFSPSASSDVSGMSPASGMSPG
YGAWSPTPQSPAMSPYMASPASMHGTSPSYSPSSPAFQPASPSMTPVSPGYSPNSPGYSP
TSPNYSPTSPSYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPSSPRYTPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSY
SPTSPSFVGGSPQYSPTSPSYSPTSPSYSPTSPQHTPGSSRYSPTSPQYSPHSTKYSPTS
PTYTPTSPSYSPASPTYSPQPPRYSPSSPSYSPGQDE
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atggctacaagcgatagcaaagctcctctacgcacagtaaagaaggtgcaattcggtatt
ttgagccctgatgatattcgacgcatgtcagtcacagagggcggcatacgcttccccgaa
accatggaagctggccgccccaaactaggcggtcttatggacccccgacagggcgtcata
gaccgacattcccgctgccaaacatgcgcgggcaacatgaccgaatgccccggtcatttc
ggccacatcgacctgtccaaaccggttttccatgtcggtttcatcacgaaaaacatcaaa
atcctccgctgtgtctgtttctactgcagcaaactcttggtcaatcctaccaacccgaaa
atcaaggagattatcatcaaaactaagggtcaacctagacgaagacttgctcacgtctat
gatctgtgtaaagggaagaatatttgtgaagggggggatgaaatggacgtttctaaagac
ggtgaagaacagatcaataataagaaagctggacatggaggttgtggaaggtaccaacca
aatatcagacgcactggactggatttacgtgctgaatggaagcatatcaatgaagactcg
caggatagaaagatagcacttacagctgaaagagtttgggagatcctaaaacacataaca
gacgaggaatgcttcattttaggtatggacccgaaatttgccagaccagactggatgata
gtcacagttctacccgtaccacctcttccagtacgaccagcagtagtaatgtacggttca
gcgagaaaccaagacgacttaacccacaagcttgcagacatcatcaaagccaacaacgaa
ctacaaaaaaacgaagctgccggagctgcagctcatattataacggaaaatacaaaaatg
cttcaattccacgtcgcaactttagttgataacgatatgcctggaatgcctagagctatg
cagaaatccggaaaacctctgaaagctattaaagcacggcttaaaggtaaagaaggaaga
atcagaggaaatctgatgggtaaacgtgtagatttctctgccagaaccgttataactcca
gatccaaacctccgaattgatcaggtaggagttccaagaagcatagctcaaaacctgacc
tttcccgaaattgtgacgccgtttaactttgagaaaatgctcgagctggttcagcgagga
aattcacagtaccctggagctaaatatattatcagagataatggggagagaatcgacttg
aggtttcatccaaaatcttcagacctacacctccaatgcggttacaaagttgaaagacac
atcagagacggagatttggtaatattcaaccgacaacccactcttcacaagatgagtatg
atggggcacagggttaaagtccttccttggtcaacttttcgcatgaatctatcctgtact
tcaccatacaacgctgatttcgatggggatgaaatgaacttgcacgttcctcaaagcatg
gaaaccagagctgagatagagaacctccacatcactccacgccaaatcataactccccaa
gccaacaaacctgtgatgggtatagtacaggacactttgacagctatcaggaagatgacc
aagagagatgtcttcattaacaacgaacaaatgatgaatctactcatgttccttccaatc
tgggatggtaaaatgcctagacctgctattttgaaacctaaacctctttggacagggaaa
caagtgttttccttgatcattcctggaaacgttaatatgatgaggacgcattcaacacat
ccagacgatgaagatgagggtccttacaagtggatatctccaggagacaccaaagtaatg
gtagaacatggtgagctaattatgggaattttatgcaagaaaactctaggtacttcagct
gggtctttactgcatatttgtatgcttgaactgggtcacgaagtatgcggtagattctat
ggaaacatccagactgtagtaaataactggttgctacttgaaggtcacagtatcggaata
ggtgacaccatcgccgatccccagacttatttagagatccagaaagcaatcaaaaaggct
aaagaggatgttattgaggttatccagaaagcacacaacatggagcttgaaccaacacca
ggcaatacactgagacagactttcgagaaccaagtaaacagaattttgaacgatgcccgt
gataaaactggtggttctgcaaaaaagtctcttactgaatacaacaatttgaaagctatg
gtggtatccggttctaaaggttcaaacattaatatttctcaagttatcgcctgtgtagga
cagcagaacgttgagggtaaacgtattccttttggatttagaaaacgaactttaccccat
tttatcaaagatgattatggtccagaatccagaggattcgtagagaattcatatctagct
ggattgacaccttcggagttttatttccacgctatgggaggtagagaaggtcttattgat
accgcagtaaaaaccgcagaaactggatacatccagcgtcgtctgatcaaagctatggaa
tcggtaatggtgaactacgatggtactgtaaggaactcagtaggtcagcttatccagcta
cgttacggcgaagacgggctatgtggtgaaatggttgagttccagtacttaccaacgatc
aaactcagcaacaaaaccttcgagaagaagttcaggtttgatccaagcaacgaaagatat
ctcagaagagtttttaacgaggatgtcataaaacaactcatgggatcaggagaagtcatt
tctgagcttgaaagggaatgggaacagcttcaaaaagaccgtgaagctttgagacaaatt
tttcctagcggggatgccaaggtggtacttccgtgcaacctccagagaatgatttggaac
gttcagaagatatttcatattaataaaagggcaccaacagacctttcaccgatcagggtg
attagaggtgtcagggacttgttagccaggtgtatcatagtggctggagaagacagacta
tcaaaacaagccaatgagaacgctactttactgttccagtgtttggtcaggtcaaccctt
tgtactaaagctgtttctgaagaattcaggctcagtactgaggcttttgagtggttaatt
ggtgaaatcgagactagatttcaacaagcacaagttaacccaggtgagatggtcggagca
ttggcagcacaatccttgggggaaccagcaactcagatgaccttgaacaccttccatttt
gctggggtgtcatccaaaaacgtcacactgggtgtaccaaggttgaaagaaatcattaac
atatccaagaagcctaaagctccatctctgactgtttttcttactggtgcagctgccagg
gatgcagaaaaagccaaaaacgtgttgtgtcgactggagcatactacactaagaaaagtg
acagcgaatactgccatttattatgatccggatcctcaaaatactgtcattccagaagat
caggaattcgtgaatgtctactatgaaatgcctgactttgatccaacgaggatttctccg
tggttgctgagaattgagcttgacagaaaacgtatgactgataagaagctgactatggaa
caaattgctgagaaaatcaatgctggatttggtgatgatttgaattgtattttcaacgac
gacaatgctgaaaaattagtcttgagaatcagaataatgaacagtgatgacggaaaattc
ggtgatgcaggtggggatgaagatgtcgacaaaatggacgacgatatgttcctaagatgc
atcgaagccaacatgctgagcgacatgactttgcaaggcatagaagccatatctaaggtc
tacatgcatctaccacaaagcgattccaaaaaaagaaccgtcatcactgaaacaggcgag
tttaaatccattgccgagtggttgcttgaaactgacggtaccagcatgatgaaagtactg
tccgaaagagacgtagatcctgtcagaacttattccaacgacatctgtgaaatattttcg
gtacttggtatagaagctgtcagaaagtctgtagaaaaagaaatgaacgcggtgttgcaa
ttttacggcctgtacgtcaactatagacatctggccttactgtgtgacgtcatgacagca
aagggccatcttatggccataacacgtcacgggatcaacagacaagacactggcgccctc
atgaggtgttcttttgaagaaactgtcgatgttttgatggatgcagcatcgcatgctgaa
gttgacccaatgagaggtgtttcggaaaatataatcttgggacagttaccaaaaatggga
actggttgttttgatctactactagatgcagaaaaatgtaaactaggtattccgatacct
caggctcatggaggtgatattatgtcgtccggaatgttttttggagctgccgcaacaccc
agtatgagtccaagcggtgctatgactccttggactcaagggagtacaccgtatgttggg
agtgcctggtctccacacaacttattaggaagtggaatgacacccggaggtcctgctttt
tcaccttcagcttcatctgacgtttctgggatgtctccagcttcaggaatgtccccggga
tacggagcatggtctccgacacctcaaagtccggcaatgtcaccttatatggcttcccca
gcatctatgcacggtacatctccgtcgtatagtccatcaagtccagcctttcaaccggca
tctccctcaatgactcccgtgtctccagggtactctccgaattctccaggttattctccg
acaagtccaaattatagtccgactagccccagttattcaccgacaagccccaggtattcc
ccgacgtcgccttcctatagtcctacgtctcctagttattcgcctacgtcaccgagttac
agtccgacttctccgagttattcaccgacttcgccgagttatagtccgacgtctccgagt
tattctcctacttctccgagttattcaccaacgtcaccgagttacagtccgacttcacca
agttattctccgacttctccaagttattcacctacttctccgagttatagtccgacatca
ccggggtattcccctacttctccgagttattcaccgacatcgccgagttacagtccgaca
tcaccgagttattctccgacttctccaagttattcgccttcttctccgagatatacgcca
gcttcgccaagttattcgcctacttctcccagttattcaccatcgtcaccacagtattcc
ccagcgtcaccgagttattcaccctcgtcacctaaatattcaccaacatctccaagttat
tcacccacttcaccctcgttcgttggtggaagtccgcagtattctcctacgtctcccagt
tattcaccaacttcaccaagttattcaccaactagtccccagcatactccaggtagttcg
aggtattcacctacttctccccagtattcacctcacagcactaagtattcaccaacgtca
cctacttatactccaacaagtccgagttattcaccagcatcacctacttattcgccgcag
cctcctagatattcaccatcgtcaccgagttattcacctggccaggatgaataa
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integrated database retrieval system
