Spathaspora passalidarum: SPAPADRAFT_139497
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Entry
SPAPADRAFT_139497 CDS
T03101
Name
(RefSeq) DNA-directed RNA polymerase I 190 kDa polypeptide
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPAPADRAFT_139497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spaa03021
]
SPAPADRAFT_139497
Enzymes [BR:
spaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPAPADRAFT_139497
Transcription machinery [BR:
spaa03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
SPAPADRAFT_139497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
TFIIA
Motif
Other DBs
NCBI-GeneID:
18870213
NCBI-ProteinID:
XP_007375606
JGI:
139497
UniProt:
G3AQ09
LinkDB
All DBs
Position
Unknown
AA seq
1639 aa
AA seq
DB search
MDISKPVGSEIKSVDFGVLSDNEIKRLSAKQITNPTVFDNLGHPINSGLYDLALGAFLRN
VCTTCGLDEKFCPGHMGHIELPVPVYNPLFFNQLYILLRASCLYCHKFKLNALEVHKYQC
KLRLIQYGLLLECVDLENMLAKGAQEIEDDDDDNDTLDQKTKQELMERRELFVNTAIAKA
LSEGRTSERGVVTATVGEERKDTIHDFYKRLLSRPKCDNCGMYSPTFRKDGFTKIFENAL
TDKQVSNNRVKGLQRPDMIRNTKGNSNTSSGDNLPNIRHKGGSKYVLSSEIRNIIRAVFT
NEQPIIQKVFHSRPYQKEIVKGDIFFRQCILVPPTRFRLPSKLGDEIHENSQNELLSNIL
KTSLLIRDLNDQISNMYQEKLSGEQKKIIFNRLMNAFVTIQNDVNAFIDSTKNQNAPAGK
VPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEP
VTSYNASELRQAVINGPDKWPGAVQVQNEDGSLVSLIGMSLEQRKAIANQLLTPSNGASV
VNKKVYRHIKNKDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDE
MNMHFPQNENAKAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTSKDTFFTREIY
QQLVYGCIRPEDGHTTRNRIITVPPAVFKPQQLWTGKQVITTILLNIKPDGVPGVNLISK
NKIKSDYWGAGSTENDVIFKNGELLCGILDKSQYGASQYGIVHSLHEVYGPTVAGKALSV
LGRLFTNYIMMTAFTCGMDDLRLTNEGNEWRKEILKQSVDIGRVAAAEVTNLDQDTSNHD
PELLRRLEEILRDDNKLGILDAITQSKVNTITSQVVSKCVPDGTMKRFPYNSMQAMALSG
AKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRP
QEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLYGG
DAIDTTKQSHMNQFKFCADNYDALLAKYNPGDMTDNLDVEEALSYSKKVRKSLKKQKELP
HYEQQIKYDPVMNVYNPAKYLGSVSEKFQDKLDAFVSENSQIFAKNKEEAKSTGKLTEKK
FRALMQLKYMRSLINPGESVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREI
IMTASAAIKTPQMTLPILDDVTDDQADAFCKSVARVVLSEFIDRVTVTETTSQSEDGTNS
RSYVIHLKFYSKQEYEQEYDVEQEQLEDVITTNFLHALEQQIVKEVKKQKKPDHLPTVGK
SAGKTDMESVSGRVMDGTTNDDEDAEEEKMRGNVKQAVSYDGPDDEEIETMKKAEETSDE
EMEDSDSDDSSSDEEEEDVDMKPETAKKSNELSRSAKDRQSEVIASHNMVTKFNFDDDEG
EWCEFQLELNGNETQKLLMVNIVEDLCRRVVVREIPRIGRCIRPQPDAKGNRLLTTEGVN
FKAMWDQDDFINVNNITSNDVAAVLHTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLI
ADMMTREGTYLAFNRQGIDSGTSAFMKMSYETTCQFLTKAVLDGNREELESPSARIVLGK
LSNVGTGSFDVFAQIPKGN
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcgaaaccagttggttcagaaatcaagtctgtggattttggtgttttgtct
gataatgaaatcaaaagattatcagccaagcaaatcaccaatcctacagtttttgacaac
ttaggccaccctataaattctgggctttatgatttggcattaggtgctttcctcagaaat
gtttgtaccacctgtggtttggatgaaaagttttgtcctggacatatgggtcatatcgaa
ttaccagtccctgtttacaacccattgttcttcaaccaattatacattttgttgagagct
tcttgtctttactgtcacaagtttaaattgaatgcattggaagttcacaagtaccaatgc
aagttgagattgatccaatacgggttgttattggaatgtgttgacttggaaaacatgttg
gctaaaggtgcccaagaaattgaagacgatgacgacgacaatgatacccttgatcaaaag
accaagcaagaattaatggagcgtcgtgagttgtttgttaatactgctattgccaaggct
cttagtgaaggtagaaccagcgaacgtggtgttgtcactgctactgttggtgaagaaaga
aaagacaccatccacgatttctacaaaagattgttgagtagaccaaagtgtgacaattgt
gggatgtattctccaaccttcagaaaagacggtttcaccaagatctttgaaaatgcattg
accgataagcaagtcagtaataaccgtgtcaaaggattacagcgtcctgatatgattaga
aacaccaagggaaattccaatacttcttcgggtgacaaccttccaaatatcagacacaag
ggaggttccaaatatgtcttgtcctcagaaattagaaacattattagagctgtgtttaca
aatgaacaacctataattcaaaaggtcttccattccagaccataccaaaaggaaattgtc
aagggtgatattttctttagacaatgcattttggttccaccaaccagattcagattacct
tctaaattaggtgatgaaatccacgaaaattcccaaaatgaacttttatccaacattctc
aagacctctttgttaatcagagatttgaatgatcaaatttctaacatgtaccaagagaaa
ttgagcggtgaacaaaagaagattattttcaacagattaatgaatgcctttgttactatt
caaaatgacgtgaatgcgttcattgattccaccaagaaccaaaatgcaccagctggtaag
gttccaaacccaggtatcaaacaagccttggaaaagaaggaagggttattcagaaaacat
atgatgggtaaaagagttaactatgctgctagatccgtcatttctcctgatcctaacttg
gaaaccaacgaaattggtgttccaccagttttcgccaagaagctaacctacccagaacca
gttacttcttataatgcatctgaattaagacaagctgttataaatggtcctgataagtgg
cctggtgcagttcaagtgcaaaacgaagatggttctttggtttccttgattggtatgagt
ttagaacaacgtaaggctattgccaatcaattgttaactccttccaacggtgcatccgtt
gtcaacaagaaggtctatagacatatcaagaacaaggatgtggttattatgaatcgtcaa
cctactttgcataaagcttctatgatgggtcataaagttagagtgttacccggtgaaaaa
accttaagattgcattatgccaatactggtgcttataatgccgatttcgatggtgatgaa
atgaatatgcatttcccacaaaatgaaaatgccaaagctgaggccttgaacttggccaat
accgataaccaatatttaactccaacctctggttctccattaagagggttgattcaagat
cacatttctgctggtgtttggttgactagcaaggacactttctttaccagagaaatttat
caacaattagtttatggatgtattagacctgaagatggccataccactagaaatagaatt
attactgttccacctgccgttttcaagcctcaacaattatggactggtaagcaagttatc
actactattttgttaaacatcaagcctgatggggttcctggtgttaacttaatctccaaa
aacaagattaagagtgactattggggtgctggatctactgaaaacgatgtgatcttcaaa
aatggtgaattactttgtggtattttagacaagtcccaatatggtgcttctcaatacggt
attgtccattccttacatgaagtctatggtcctacagttgccggtaaggctttgagtgtc
ttgggtagattattcaccaactatatcatgatgactgcattcacgtgtggtatggatgat
ttgagattaaccaacgaaggtaatgaatggagaaaggaaatcttgaaacaatcagttgat
attggtagagttgctgctgctgaagtcaccaacttggaccaagatacttccaatcatgat
cccgagttattgagaagattggaagaaatcttgcgtgatgataataagcttggtattttg
gatgcaatcactcaatccaaggttaacactattacttctcaagttgtttccaagtgtgtt
cctgacggtactatgaagcgtttcccatacaattctatgcaagctatggctctttccggt
gccaagggttccaacgttaacgtttctcaaattatgtgtcttttagggcaacaagcttta
gaaggtagaagggtgccagtcatggtttcaggtaagactttgccatcatttaagccattt
gaaactgatgctcgtgctggtggttatatcaagggtcgtttctactccggtattagacct
caagaatactatttccattgtatggctggtagagaaggtttgattgatactgctgtcaag
acttccagatctggttatttacaaagatgtttgactaaacaattagaaggtgttcatgtc
agttatgataactcggttagagacggtgatggtactttgatccaattcctttacggtggt
gatgcaattgatactactaagcaatcgcacatgaatcaattcaaattctgtgctgacaat
tacgacgcgttattggccaagtacaacccaggtgatatgactgacaatttggatgttgaa
gaagcactttcctactccaagaaggtacgtaaatcattgaagaaacaaaaggaattacct
cattacgaacaacaaatcaagtatgatccagtaatgaatgtttataaccctgctaaatat
ttgggttctgtttccgaaaagttccaagataaattagacgcctttgttagtgaaaactca
caaatatttgccaagaacaaggaagaagccaaatctactggtaagttgaccgaaaagaag
ttcagagccttgatgcaattgaaatacatgagatctttgatcaacccaggtgaatcagtc
ggtattattgcctcgcaatctattggggaaccttctacacaaatgacattaaatactttc
catttcgctggtcacggtgctgccaatgtgacattgggtattcctcgtatgagagaaatt
attatgactgcttctgctgctatcaagactccacaaatgaccttgccaatcttggatgat
gttactgatgatcaagctgatgccttctgtaaatctgttgctagagttgttttatctgaa
ttcattgaccgagtcactgttacagaaactacttctcaatctgaagatggtactaattca
cgttcttacgttattcatttgaaattctactccaagcaagaatatgagcaagagtatgat
gttgaacaagaacaattggaagatgttattaccaccaatttcttgcatgctcttgaacaa
caaattgtcaaggaagtcaagaagcaaaagaagccagatcatttaccaactgttggtaaa
tctgctggtaagactgatatggagtctgttctgggtagagtcatggatggtactactaat
gatgacgaagatgccgaagaagaaaagatgcgtggtaatgttaaacaagctgtttcttat
gatggtccagatgatgaagaaattgaaactatgaagaaagccgaagaaaccagtgatgag
gaaatggaagattctgattctgacgattcttcaagtgatgaagaagaagaagatgttgac
atgaagccagaaactgccaagaaatctaatgagctttctcgttctgccaaggaccgtcaa
tctgaagtcattgcttctcataacatggtcaccaaattcaacttcgatgatgatgaaggt
gaatggtgtgaattccaattagaattaaacggtaacgaaacccaaaagttgttgatggtc
aatattgttgaagatttgtgtcgtcgtgttgttgtcagagaaattccacgcattggtaga
tgtattcgtccacaaccagatgccaagggtaacagactcctcaccaccgaaggtgtcaac
ttcaaagctatgtgggatcaagatgatttcatcaatgtcaacaatatcacttctaacgat
gttgctgctgtattacatacttatggtgttgaggctgctcgtaacactattgtcaatgaa
atataccgagttttcgatacctatggtatcagtgtttcttctcgtcatttagatttgatt
gctgatatgatgaccagagaaggtacttaccttgctttcaatagacaaggtatagatagt
ggtacatctgcattcatgaagatgtcctatgaaactacatgtcaattcttaaccaaggcc
gtcttggatggtaaccgtgaagaattggaatctccttctgcaagaattgttttaggtaaa
ttatcaaatgttggtactggttcgtttgatgtttttgcccaaataccaaaaggtaattag
DBGET
integrated database retrieval system
