Solanum pennellii: 107020391
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Entry
107020391 CDS
T04130
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
spen
Solanum pennellii
Pathway
spen03020
RNA polymerase
spen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107020391
09124 Replication and repair
03420 Nucleotide excision repair
107020391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107020391
03400 DNA repair and recombination proteins [BR:
spen03400
]
107020391
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107020391
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107020391
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
107020391
NCBI-ProteinID:
XP_015076219
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All DBs
Position
5:4961968..4967407
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AA seq
319 aa
AA seq
DB search
MEGASYQRFPKIKIREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS
VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV
TSKDLLSSDHTVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW
SPAATVTFMYEPEIYINEDMMESLSLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY
DDEVLKKAEAMGKPGVVEIHAREDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD
DTVEADDQFGELGAHMRGG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgcttcgtaccagagattcccaaagataaaaatacgtgaagttaaagacgat
ttcatgaaattcgagctccgggacaccgacgccagtatagctaacgctctccggcgtata
atgatagctgaagtacctactatagctatagacctagttgaaatcgaggtcaattcctct
gttctcaacgatgagttcatttctcatcgtttagggcttgtgccgctaactagtgaacga
gcgatgagtatgcgtttctcacgtgactgtgatgcttgtgatggtgatggacaatgtgag
tactgttcggttgagttttatctacgggtgaaatgtcttagtgaccagacgcttgatgtt
actagcaaggatttgttgagttctgaccatacggttgttcctgttgattactccgatgct
tcctcgagttttgataatactcctaataagggaatcataattgtgaagctacgacgtgga
caggagttaaggttaagagctatagcacggaaaggaattggcaaagatcacgcgaaatgg
tcacctgcagcaactgtgactttcatgtatgaaccagagatctacatcaatgaggacatg
atggaatccttgagtctcgaggagaaaacagaattagttgagagtagtcccacaaaagtc
tttggcattgaccccgagaacaaacaggttattgtcgttgatcctgaggcatatacttac
gatgatgaggtgctcaagaaagctgaagccatgggaaaacctggagttgtagagatacat
gccagggaagatagttttattttcacagttgaaacaactggcgcagtcaaagcttcacaa
ttggtgctcaatgcaatagaagtgcttaagcagaagttggatgcagtacgcctttcagat
gacaccgttgaagcagacgatcagtttggagagctgggcgctcatatgcgtggaggttaa
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