Rhizorhabdus wittichii DC-6: HY78_25835
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Entry
HY78_25835 CDS
T05200
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd03030
DNA replication
sphd03410
Base excision repair
sphd03420
Nucleotide excision repair
sphd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HY78_25835
03410 Base excision repair
HY78_25835
03420 Nucleotide excision repair
HY78_25835
03440 Homologous recombination
HY78_25835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphd03032
]
HY78_25835
03400 DNA repair and recombination proteins [BR:
sphd03400
]
HY78_25835
Enzymes [BR:
sphd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HY78_25835
DNA replication proteins [BR:
sphd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HY78_25835
DNA repair and recombination proteins [BR:
sphd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HY78_25835
NER (nucleotide excision repair)
GGR (global genome repair) factors
HY78_25835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
HHH_2
DNA_pol_lambd_f
HHH
Taq-exonuc
AP5B1_middle
Motif
Other DBs
NCBI-ProteinID:
ARR56612
LinkDB
All DBs
Position
5484628..5487414
Genome browser
AA seq
928 aa
AA seq
DB search
MSSKHLYLVDGSGYIFRAYHRLPPLTNRHGIPAGAVYGFTTMLWKLINELHQADGPTHLA
VILDASSKTFRNEMYDQYKAHRPPPPEDLVPQFPLIRDAVRAFSVPCIEELGLEADDIIA
CYAEAALAQDWQVTIVSSDKDLMQLIRPGLDLLDTMNNRRLGREHVLEKFGVEPEALGDV
LALMGDSVDNVPGVPGIGPKTASQLIQQFGTLDAVLASTDQITKPKLKQSLIDHADNARL
SRELVRLKCDAPLPEPLDGLELKGLPPEPLRAFLEDQGFKSLLAKVQGDGPATLPTGGPT
MLALAPGAEEKPAPVIAQVPFNHKDYETVVDEAALDRWIADGFACGRIAVDTETDNVDPV
RANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQIAMDAALAKLKPLLEAAHILKIGQN
IKYDMVVLAKYGVDVAPYDDTMLLSYDLDAGLGGHGMDELAQRHLDHACIEFKTVCGTGK
SQISFDKVTLDVATEYAAEDADVTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLAGMER
AGIKVDREELARLSAEFSGEATRLEAAIHAEAGTPFTVGSPKQLGDILFDKMGLKGGRKG
KTGVYSTDVTELERLAGDGVAIARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSM
AVAQTGRLSSTDPNLQNIPIRSDHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVP
ALKDAFARGDDIHALTAQEVFGEVNRDTRARAKTINFSILYGISAWGLAGRLEVSREEAQ
GMIDRYFSRFPGINHYIAATLGQVRDQGYVSTLFGRKTHLPWIRSAKQGERQSAERQAIN
APIQGTSADIIKRAMVRMNPALAAAGLGDVKMLLQVHDELVFELAPEQVEPASAVIRAVM
AGAAEPIVRLSVPLGVEIGTGPSWGAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaagcatctctatctggtcgacggctccggctatattttccgggcctatcat
cgcctgccgccgctcaccaaccgccacggaatcccggccggggccgtctacggcttcacg
acgatgctgtggaagctgatcaacgagctgcaccaggccgacggcccgactcacctggcg
gtgattctcgacgcctcgtcgaagaccttccgcaacgagatgtacgaccagtacaaggcg
caccggccgccgccgcccgaggacctggtgccgcaattcccgctgatccgcgacgcggtg
cgcgccttctcggtcccctgcatcgaggaattggggctcgaggccgacgacatcatcgcc
tgctatgccgaagccgcgctggcgcaggactggcaggtcacgatcgtctcgtccgacaag
gacctgatgcagctcatccggcccggcctcgacctgctcgacacgatgaacaaccgccgc
ctcggccgcgagcatgtgctggagaaattcggcgtcgagccggaggcgctgggcgacgtg
ctcgcgctgatgggcgacagcgtcgacaatgtccccggcgtccccggcatcggacccaag
accgcgagccagctcatccagcagttcggcaccctcgacgcggtgctcgccagcaccgac
cagatcaccaagcccaagctcaagcagtcgctgatcgaccatgcggacaacgcccggctg
tcgcgcgagctggtccgcctgaaatgcgatgcgccgctgcccgagccgctcgacgggctg
gaattgaagggcctgccgcccgagccgctgcgcgccttcctggaggaccagggcttcaag
tcactgctcgccaaggtgcagggcgacggccccgccaccctgccgaccggcggcccgacc
atgctggcgctcgcgcccggcgccgaggagaagccggcgcccgtgatcgcgcaggtgccg
ttcaaccataaggattacgagaccgtcgtcgacgaggcggcgctcgaccgctggatcgcc
gacggcttcgcctgcggccggatcgcggtcgacaccgagaccgacaatgtcgatccggtc
cgcgccaacctggtcggggtcagcctgtccaccgcgccgggcaaggcctgctacatcccg
ctcgcccatatcggcgacgggctgctgtcggagacgcccaggcagatcgcgatggacgcg
gcgctggcgaagctcaagccgctgctcgaagccgcgcacatcctcaagatcggccagaac
atcaaatatgatatggtcgtgctggccaaatacggcgtcgacgtcgcgccctatgacgac
acgatgctgctgtcctacgatctcgacgccgggctcggcggccacggcatggacgaattg
gcgcagcgccacctcgaccatgcctgcatcgagttcaagacggtgtgcggcaccggcaag
agccagatcagcttcgacaaggtgacgctcgacgtcgccaccgaatatgccgccgaggac
gccgacgtcacgctgcgcctgtggcagctgctgaaggggcggctcgcgcccgaggcggcg
acccgcgtctatgagctgatcgaccggccgctggtgccggtgctggcgggcatggagcgc
gccggcatcaaggtcgaccgcgaggaactggcccggctgtcggccgagttctcgggcgag
gcgacccggctggaggccgcgatccacgccgaggcggggacgccgttcaccgtcggcagc
cccaagcagctcggcgacatattgttcgacaagatgggcttgaagggcggccgcaagggc
aagaccggggtctattcgaccgacgtcaccgaactggagcggctcgcgggcgacggcgtg
gcgatcgcgcggctggtgctcgactggcgtcagctcaccaagctgcgctcgacctatacc
gacgcgctccagcagcagatcaatccggcgacgggccgggtccacacctgcttctcgatg
gcggtcgcgcagaccggccggctgtcctcgaccgatcccaacctccagaacatcccgatc
cgcagcgaccatggccgccgtatccgcgacgccttcgtggccgagccgggcaagctcatc
ctgtcggccgactattcgcagatcgagctgcggctggcagcgcacatggccgacgtgccg
gcgctgaaggacgccttcgcgcgcggcgacgacatccacgcgctgactgcgcaggaggtg
ttcggcgaggtcaaccgcgacacccgcgcccgcgccaagacgatcaacttctcgatcctc
tacggcatctccgcctggggcctcgccgggcgcctggaggtgtcgcgcgaagaagcgcag
gggatgatcgaccgctatttctcccgcttccccggcatcaaccactatatcgccgcgacc
ctcggccaggtccgcgaccagggctatgtgtcgacgctgttcggccgcaagacccatctg
ccgtggatcaggagcgccaagcagggcgagcgccagtccgccgagcgccaggcgatcaac
gccccgatccagggcacctccgccgacatcatcaagcgcgcgatggtgcggatgaaccct
gcgctcgccgccgccgggctgggcgacgtgaagatgctgctccaggtccatgacgaactg
gtgttcgagctggcgcccgagcaggtcgagccggcatcggcggtgatccgcgcggtgatg
gcgggcgcggccgagccgatcgtccggctgtcggtgccgctgggcgtcgagatcggcacg
gggccgagctggggcgccgcgcattga
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