Sphingobacterium sp. dk4302: GFH32_00205
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Entry
GFH32_00205 CDS
T06292
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sphe
Sphingobacterium sp. dk4302
Brite
KEGG Orthology (KO) [BR:
sphe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sphe03009
]
GFH32_00205 (rimO)
Enzymes [BR:
sphe01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
GFH32_00205 (rimO)
Ribosome biogenesis [BR:
sphe03009
]
Prokaryotic type
ribosomal protein modification factors
GFH32_00205 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QGA24844
UniProt:
A0A5Q0Q6H4
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All DBs
Position
31920..33254
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AA seq
444 aa
AA seq
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MKTKIRNTAPVLVKPRVNVVTLGCSKNIHDSEVLMGQLKGNQMDVVHEANNIQANDIVVI
NTCGFIDNAKQESIDTILQFSELKDQGKVNKVIVTGCLSERYKPELEAEIPNVDAFFGTN
DLPELLSTIGADYRHELLGERLLTTPSHFSYFKIAEGCNRPCSFCAIPLMRGKHVSKSID
DLVKEAKFLASNGTKELILIAQDLTYYGLDIYGKRNLSDLLRHLSDVDGIEWIRLQYAYP
SGFPMDILDAMNERSNICNYLDMPLQHISDNMLTSMRRGTSKQKQIDLVNKIRDKVPNIA
LRTTLICGYPGETEQDFNEMLDWVEETRFDRLGCFTYSHEEKTHAFSLEDDIAEEVKQER
VDQIMEVQQGISYDINQTKIGNTYKTLVDRVDGDYFIGRTEFDSPEVDNEVVLDAKSNYA
RIGDFVQVKVDRAEDFDLYGTIVK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaaagataagaaatacagctcccgtattagtgaagccacgtgtaaatgtggtt
actttgggctgttctaaaaatattcacgatagcgaggttttaatgggtcagttgaagggc
aaccaaatggatgtcgttcatgaggctaataacattcaagcgaatgatatcgttgtcatt
aatacctgtggatttattgataatgctaagcaggaatcaatagataccattttgcagttt
tcggaacttaaagatcaaggtaaagtcaacaaggtaattgttacaggttgtttgtccgag
cgctataagcctgagctagaagctgagattccgaatgtagacgctttttttggaacaaac
gatcttccagagttactgtctacgattggagcagattatcgtcatgagcttctcggtgag
cgcttattaacgacgccatctcatttctcgtattttaagattgccgaagggtgtaatagg
ccatgttccttttgtgccatcccgcttatgcgtggtaagcatgtttcaaaatctattgat
gatttagtaaaagaggcgaagtttttagcgtctaatggcaccaaagaactgattctaatt
gcgcaggatttaacatattacggtttagatatctacggtaaacgaaatctatctgatttg
ctacgccatctatctgatgtcgatggaattgaatggatccgtttacaatatgcttatcct
tcaggttttccaatggatattttggatgccatgaatgagcgatcgaatatttgtaattac
ctggatatgccacttcagcatatctccgataatatgctaacctcaatgcgtcgcggaacg
agcaagcaaaagcaaattgatctagtcaataagattcgcgataaagttcctaatatcgca
ttgcgtacaacacttatctgtggttatcctggcgaaactgagcaagatttcaacgagatg
ttggactgggttgaagagacacgcttcgatagattaggttgttttacttattctcatgag
gaaaagacacatgctttttcattagaagatgatattgcagaagaggtgaaacaagaacgt
gttgaccagataatggaggttcaacaagggatttcttatgatattaaccaaacgaagatt
ggcaatacctataaaacattggttgaccgcgttgatggtgattattttatcggaagaaca
gaatttgactctccagaggttgataacgaagttgttttagacgcgaagtccaattacgct
cgtattggtgattttgtacaagttaaagtcgaccgtgcggaagactttgatttatatgga
actattgtaaaataa
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