Sphingopyxis fribergensis: SKP52_06625
Help
Entry
SKP52_06625 CDS
T03542
Symbol
lysS
Name
(GenBank) Lysine-tRNA ligase
KO
K04566
lysyl-tRNA synthetase, class I [EC:
6.1.1.6
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
SKP52_06625 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
sphk01007
]
SKP52_06625 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphk03016
]
SKP52_06625 (lysS)
Enzymes [BR:
sphk01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
SKP52_06625 (lysS)
Amino acid related enzymes [BR:
sphk01007
]
Aminoacyl-tRNA synthetase
Class I (A)
SKP52_06625 (lysS)
Transfer RNA biogenesis [BR:
sphk03016
]
Prokaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
SKP52_06625 (lysS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1f
tRNA-synt_1g
tRNA-synt_1b
Anticodon_2
Motif
Other DBs
NCBI-ProteinID:
AJA08248
UniProt:
A0A0A7PGB8
LinkDB
All DBs
Position
1395759..1397360
Genome browser
AA seq
533 aa
AA seq
DB search
MTDLHLHPSLREPAQTSKAWPFEEARKLVKRYPDGKPGGEAVLFETGYGPSGLPHIGTFN
EVLRTTMVRRAYEALTGGAPTRLVAFSDDMDGLRKVPDNVPNGDMLREYLGKPLTAIPDP
FGKFESFAHHNNAMLREFLDRFGFEYEFVSSTERYKTGAFDDALRNVLRHNQDILDIMLP
TLRAERAATYSPILPVSPKSGIVLQVPVTVVDADAGLVSFEDEGETITHSILGGGAKLQW
KVDWAMRWVALGVDYEMYGKDLTDSGTQSGKIAKALGGRKPEGLIYEMFLDEKGEKISKS
KGNGLSLEQWLDYGSEESLAFFAYREPKAAKQLHIGVIPKAVDEYLQMRGNYAAQEPDKK
LGNPVHHVHVARGEDMPSAELPVTFGLLLNLVGVMGADASKDQIWRYLGQYVAGANAEAY
PELDRLIDNAMAYNRDYVAPTLKRRKPAGGEGAALADLDTKLAALPADASADDIQNIVYE
IGKNEAYGFESLRDWFKALYETLLGSSAGPRMGSFVALFGVENTRRLIAEALA
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctgcaccttcacccttcgctgcgcgaacccgcgcaaacgtccaaggcctgg
ccgttcgaggaagcgcgcaagctggtcaaacgctatcccgatggcaagccgggcggcgag
gcggtcttgttcgagacgggttatggtccctcgggcctgccgcatatcggcaccttcaac
gaagtgctgcgcaccacgatggtccgccgcgcctatgaggcgctgaccggcggcgcgccg
acgcggctggtcgcgttcagcgacgatatggacgggttgcgcaaggttcccgacaatgtg
ccgaacggcgacatgctgcgcgaatatctgggcaagccgctcaccgcgatccccgacccg
ttcgggaagtttgagagtttcgcgcatcataacaatgcgatgctgcgcgagtttctcgac
cgcttcggcttcgaatatgaatttgtcagttcgaccgagcgctacaagacgggcgcgttc
gacgacgcgctgcgaaatgtcctccgccacaatcaggacattctcgacatcatgttgccg
acgctccgcgccgagcgcgccgcgacctattcgccgatcctgccggtgagcccgaagtcg
ggcatcgtgctgcaggttccggtgaccgtggtcgatgccgacgccggtctggtatcgttc
gaggacgagggcgagacgatcacccactcgatccttggcggcggcgcgaagctgcaatgg
aaggtcgactgggcgatgcgctgggtcgcgctcggcgtcgattacgagatgtatggcaag
gatctaaccgacagcggcacccagtcgggcaagattgccaaggcgcttggcgggcgcaag
cccgaggggctgatctacgaaatgttcctcgacgaaaagggcgagaagatttcgaagtcg
aagggcaatggcctcagcctcgaacaatggctcgactatggcagcgaggaaagcctggcc
tttttcgcctatcgcgagcccaaggcggcgaagcagctgcacatcggggtgatcccgaag
gcggtcgacgaatatctgcaaatgcgcggaaattacgcggcgcaggaacccgacaagaag
ctcggcaaccccgtgcaccacgtccatgtcgcgcgcggcgaggatatgccgagcgccgag
ctgccggtgactttcgggttgctgctcaatctcgtgggcgtcatgggcgccgatgcgtcg
aaggaccagatctggcgctatcttggccaatatgtcgcgggcgcgaatgccgaggcttat
cccgaactcgaccggctgatcgacaatgcgatggcgtataaccgcgattatgtcgcgccg
acgttgaagcgccgcaagcccgcgggcggcgagggcgcggcgctggccgacctcgacacg
aaactggctgcgctgcccgccgatgcctcggccgacgatatccagaacatcgtgtacgag
attggcaagaacgaagcctatggctttgaaagcctgcgcgattggttcaaggcgctgtac
gagaccctgctcgggtcgagcgccggaccgcgcatgggcagctttgtcgcgctgttcggc
gtggagaatacgcggcggctgatcgccgaggctttggcgtag
DBGET
integrated database retrieval system