Sphingorhabdus lutea: LPB140_05095
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Entry
LPB140_05095 CDS
T04602
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03030
DNA replication
sphl03410
Base excision repair
sphl03420
Nucleotide excision repair
sphl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB140_05095
03410 Base excision repair
LPB140_05095
03420 Nucleotide excision repair
LPB140_05095
03440 Homologous recombination
LPB140_05095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphl03032
]
LPB140_05095
03400 DNA repair and recombination proteins [BR:
sphl03400
]
LPB140_05095
Enzymes [BR:
sphl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPB140_05095
DNA replication proteins [BR:
sphl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB140_05095
DNA repair and recombination proteins [BR:
sphl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LPB140_05095
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB140_05095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_5
DprA_N
HHH_2
HHH
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
APG62282
UniProt:
A0A1L3JAY0
LinkDB
All DBs
Position
1075043..1077919
Genome browser
AA seq
958 aa
AA seq
DB search
MTNIDTDESSAGNNNQRPNHLYLIDGSAYIFRAYHRLPPLTNIHGEPVGAVYGYTSMLWK
LADDLHAADGPTHMAVVLDKSSKSFRNDIYDQYKANRPPAPEDLRPQFPMIRDATNAFSL
PLIEEENVEADDMIASYTKAAIAAGWRVTIVSSDKDLMQLIEPVEDSRVDMLDTMKNARI
GDAGVRAKFDVGPDKVGDVLALMGDSADNVPGVPGVGPKTASKLINEFGDLESVLAAAPE
MKKSKMRENLIEHSDKARLSKILVTLKDDCPLPIALEDMPLRDIPPEPLAEFLTYHGFNS
LLKRIGQLSDVSAANKAIAGTRGADHDKVKIDAAGAIMAGQAAKPPEMPPINIDDYVMVT
DAEDLQKWVDRARAIGHFAFDTETDSLEAVTANLIGFSMAITAGEACYVPLAHGGTDLLA
QRPEMVEMKTALDIIRPLLADDSVLKIGQNLKYDKLVLAQHDIIINNIDDTMVMSFNLDA
GKHGHGMDELAKRHLGHECISYKSLTGTGKKQISFAEVPVEDATKYAAEDADVTLRLWQH
LKLRLPAEGASKIYQMVDRPLVDVIAKMEGEGILVDREKLAKLSHDFAGEMARLEQEIYA
IAGEEFTLGSPKQLGEILFGKMGLKGGKKGKSGQFSTDVTVLEDLASNGVEIAQKILDWR
QLAKLKSTYTDALQAQINPKTGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRH
AFVADKGNVILAADYSQIELRLAAHIANIAPLKEAFEAGEDIHARTAQELFGEVTRESRG
RAKTINFAILYGISRWGLAKRLEVTPDEAQAMIDIYFARFPGISAYIQETTTRVKECEYT
ETLFGRKTHFPRINSSNGAERQGSERAAINAPIQGTCADIIKRAMARMVPALQHAGLGDV
KMLLQVHDELVFECPQDKIDAASKVINDVMANAALPYLTLSIPLGVDIGTGASWGEAH
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatattgatacagacgaatccagcgcgggaaataataaccaacgccccaatcat
ctttaccttatcgatgggtcggcatatatttttcgtgcctatcaccgattaccgccattg
accaatattcatggtgagccggtgggcgcggtatatggatatacgtcaatgttgtggaaa
ttggcggatgatttgcacgccgccgacgggccaacccatatggcggtggtgctggataaa
tccagcaaaagtttccgcaatgatatttatgatcaatataaggcgaaccgcccccccgcg
ccagaggatttgcgcccgcaatttcccatgatacgcgacgcaaccaacgcattctccctc
ccgttaattgaggaggaaaatgtggaggcggacgacatgattgccagctataccaaggcg
gcaattgccgccggatggcgcgtcaccattgtcagttcggacaaggatttgatgcagtta
atcgaaccggttgaggatagccgcgtcgacatgctggataccatgaaaaatgcccgtatt
ggcgatgcaggggtgcgggccaaatttgatgttgggccagataaggttggcgatgtgctg
gcattaatgggggatagcgcggataatgtgcccggtgtgccgggggttgggccgaaaacc
gcatcaaaactaatcaatgaatttggcgatttggaaagcgtgttggccgccgcgccggaa
atgaagaaatccaaaatgcgcgaaaaccttatcgaacatagtgataaagcgcgtttgtcc
aaaattttggtgacgttgaaagatgattgcccgctgcccattgctttggaagatatgcct
ttgcgggatattccgcccgaaccattggccgaatttttaacctatcatgggtttaattca
ttgttaaaaagaattggccaattatccgatgtttccgccgctaataaagcgattgcaggg
acaagaggcgctgaccatgacaaggttaaaattgacgcggcaggtgctataatggccgga
caggctgcaaagccgcccgaaatgccgccgataaatattgatgattatgtcatggtgacg
gacgcggaggatttgcaaaaatgggtggaccgcgcccgcgccattggccattttgccttt
gacaccgaaaccgatagtttggaggcagtgaccgccaatttaatcggcttttccatggcg
ataacagcgggggaggcatgttatgtccccttggcccatggcggcacagatttgttggcg
cagcgtcccgaaatggtggagatgaaaactgcgctggacattattcgtccattattggcc
gatgatagcgttttgaaaattggtcaaaatttgaaatatgataagctggttttggcgcag
catgatattatcatcaacaatattgatgacacgatggtgatgagtttcaaccttgatgcg
ggtaaacatggccatggcatggatgagcttgccaaacggcatttggggcatgaatgtatc
agctataaatcacttaccggcacgggtaaaaaacagattagctttgccgaagtccccgtg
gaggatgcgacaaaatatgccgccgaagatgcggatgtgaccctgcgcctgtggcaacat
ttgaaattgcgtttgcccgccgaaggggcaagcaaaatttaccaaatggttgaccgccca
ttggtggatgtcatcgccaagatggagggtgagggcatattggttgaccgcgaaaaattg
gcaaagttaagccatgattttgccggtgaaatggcgcgtttggaacaggaaatttacgcg
attgcgggtgaggaatttacgctgggcagtcccaaacaattgggcgaaattttatttggt
aaaatgggcctgaaaggtgggaaaaaaggaaaatcgggacaatttagcaccgacgtcacc
gtattggaagatttggccagcaatggtgtagagatagcgcaaaaaatccttgattggcgg
caattggccaaattaaaatccacctataccgacgcactgcaggcgcaaatcaaccccaaa
acggggcgcgtgcataccagctatagcttggtcggggcacagacggggcggctttcctcc
accgatcccaatttgcaaaatatcccgatacgaactgaaataggtcgtcaaatacgccat
gcctttgttgcggataagggtaatgtcatattggcggcggattatagccaaattgagctt
cggcttgccgcgcatattgccaatattgcgccgcttaaagaagcgtttgaggcaggggaa
gatattcacgcccgcaccgcgcaggagctgttcggggaggtgacgcgcgaaagccgtggc
cgtgcaaagacgataaattttgccattctttatggcatatcgcgttggggattggccaaa
agattggaagtaacacccgatgaagcccaagcgatgattgacatatattttgcccgtttc
cctggtatttccgcctatattcaggaaaccacgacaagggtgaaggaatgcgaatatacc
gaaacattatttggccgaaaaacgcattttccgcgtatcaattcatccaatggcgcagag
cgtcagggcagtgaacgtgccgcgataaacgctccgatacaggggacatgcgcggatatt
atcaaacgggcaatggcacgaatggttcctgctttacaacatgccggattgggtgatgtc
aaaatgttgctgcaggtgcatgatgaattggtttttgaatgtccgcaggataaaatcgat
gccgccagcaaggtgataaatgatgtcatggccaatgcggccttgccctatttaacgctt
tccatcccccttggcgtggatattggcacgggggcaagctggggcgaggcgcattaa
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