Sphingorhabdus sp. YGSMI21: CHN51_09670
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Entry
CHN51_09670 CDS
T05308
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sphy03009
]
CHN51_09670
Enzymes [BR:
sphy01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
CHN51_09670
Ribosome biogenesis [BR:
sphy03009
]
Prokaryotic type
ribosomal protein modification factors
CHN51_09670
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
ATW03770
UniProt:
A0A2D3RDJ1
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All DBs
Position
1974883..1976265
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AA seq
460 aa
AA seq
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MATQIPSPPKVGMVSLGCPKALVDSERILTQLRSDGYDMSADYAGADVVLVNTCGFLDSA
KEESLEAIGEAMAENGRVIVTGCMGNEADVIMKRFPDVLAVTGAHQYEDVVTAVHAAAPA
ARGAFVDLVPEAGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDLVSRRPDAILREAEK
LVEAGTKELLVISQDTSAYGVDIRHQSRQWNGPTGQGREVRAHMTDLAAALGELRTPEGQ
GVWTRLHYVYPYPHVDKVIPLMAERKITPYLDIPFQHAAPNVLKRMKRPANEAKVLHRVK
SWRDICPDLTIRSTFVVGFPGETEDDFKYLLDWLEEAQLDRVGAFRFEPVEGAAANLLDG
AVPEAVKEERYQRIMDVTARISAAKLQAKVGRTLPVIIDDIGEPDEDGDVGATARSEADA
PEIDGNVFLRNVPASLSVGDIVDAVIEDADEHDLFGVAAG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggctacccaaatcccttctccgcccaaagtgggcatggtctcgctcggctgtcccaag
gccctggtcgacagcgaacgcattctgacgcagctgcgctcggacggctatgatatgtcg
gcagactatgccggtgccgatgtagtgctggtcaacacctgcggcttcctcgacagcgcc
aaggaggagagcctcgaggcgatcggcgaggcgatggccgagaatggccgggtgatcgtc
accggctgcatgggcaatgaagccgatgtgatcatgaagcgcttccccgatgtgctcgcc
gtcaccggcgcgcatcagtacgaggatgtcgtgaccgcggtccacgctgcggcgccggcg
gcgcgcggcgcgtttgtcgatctggtgcccgaagcgggcctcaagctgaccccgcgccac
tacagctatctcaagatctccgagggctgcaaccatcgctgttccttctgcatcatcccg
agcctgcgcggcgaccttgtctcccgccgccccgacgcgatcctgcgcgaagcggagaag
ctggtcgaggccggcaccaaggagctgctggtgatcagccaggacacctcggcttatggc
gtcgacatccgccaccagtcccgccagtggaacggcccgaccggtcagggccgcgaagtc
cgcgcccatatgaccgatctcgccgccgcgcttggcgagctgcggacacccgaagggcag
ggcgtgtggacccggctccactatgtctatccctatccgcatgtcgacaaggtcatcccg
ctgatggccgagcgcaagatcacgccctatctcgacatcccgttccagcacgccgcgccc
aacgtcctcaagcgcatgaagcgcccggccaacgaggccaaggtgctgcatcgggtcaag
tcctggcgcgatatctgccccgatctcaccatccgctcgaccttcgtcgtcggcttcccc
ggcgagaccgaagacgacttcaaatatctcctcgactggctcgaggaagcccagctcgac
cgcgtcggtgcgttccgctttgaacccgttgaaggcgctgcggccaacctgctcgacggc
gctgtgcccgaagcggtcaaggaagagcgataccagcggatcatggacgtcaccgcccgg
atcagcgccgccaagctgcaggccaaggtcggccgcactttgcccgtgatcatcgacgac
atcggcgagcccgacgaggatggcgatgttggtgcgacggcacggagtgaggccgatgcg
ccggagatcgacggcaatgtcttcctccgcaatgtccccgccagcctgtcggtcggcgat
atcgtcgacgcggtgatcgaggatgccgacgagcatgacctgttcggggttgctgcgggt
tag
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