Schizosaccharomyces pombe (fission yeast): SPBC4C3.05c
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Entry
SPBC4C3.05c CDS
T00076
Symbol
nuc1
Name
(RefSeq) DNA-directed RNA polymerase I complex large subunit Nuc1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPBC4C3.05c (nuc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spo03021
]
SPBC4C3.05c (nuc1)
Enzymes [BR:
spo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPBC4C3.05c (nuc1)
Transcription machinery [BR:
spo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
SPBC4C3.05c (nuc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
2540873
NCBI-ProteinID:
NP_596300
PomBase:
SPBC4C3.05c
Ensembl:
SPBC4C3.05c
UniProt:
P15398
Structure
PDB
LinkDB
All DBs
Position
II:3127776..3133199
Genome browser
AA seq
1689 aa
AA seq
DB search
MNIAQPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKN
SVCATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFF
CRLKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMR
IRDEFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRK
EGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDL
FEEDPNPLKNKSKSPIAHGAKYMTSTEVRNHLRRLFVKENVVLSRLYAHKRGKPASADMF
FLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIASLSKDSTVEVNPDEKEGL
ERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMM
GKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPG
ASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNG
DMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNAR
SEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDE
TGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSE
EGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRG
FTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDE
KLQGLDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLL
GQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLI
DTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFE
FSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPSRYLGSVSEK
FQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQ
SIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRA
SAFCKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEI
ESTFSNRFLKILNRIIKSYLAKSKQRKSGGKDDTVPEVGQALKPLEDIDEAPIEGRAQEA
LEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDE
SVSDFKERKLLEKQNTVSISERRELQLKTAKEILSNCKHLDFDYVNGEWATVELVFPINT
EKLLMVSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFYNEIS
MNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKA
FNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIF
TPVVDSPAN
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgcacagccagtctcttcggagattaaaagtgtgaagtttgggatttacgat
gttgacgatgtcgaaaaaatatccgtcaaacaaatcgtaaatcccgttttgcttgacaat
ttaaatcaccctactaacggcggattatatgaccttgctttgggtccatatctaaaaaat
tctgtttgcgctacatgtcatttggatgaaagatactgccctggtcattttggtcatata
gtacttcctattcctgcatatcaccctctatttttttctcaaatgtacaatttattacgt
tcaacttgcttgtactgccatcatttcaagctttcaaaagtcaaggttcatcttttcttt
tgtagactcaagttgcttgattatggtcttttaaatgagtcagagatggtggagaatgtc
agtcttactgaggcaatcataaagaattctaacggcactccacttgaagatggaagtgac
agcgaggacagtggtcttggacacgatgatattgctaaagatgctgcaacacttatgcgc
attcgcgatgaattcgttgctaagtctattgctgactcacgccagaacgctcatatcgat
gctcagttgactacacttcttttacacgagaggaaaaaagttgtgcgtgccttctaccat
gccatttcatctcgcaaacaatgtgataattgccagtctttttcccctaactttaggaaa
gaaggctttgctaaaatattcgagattccattgagtggaaaaaatctccaatttatggag
caaaccggaaaaattcgttctgacgttcttcgtgatactagtaaaaagcatcatgaagat
gagggatatgatggagattctgattcgagtaatgaaagtgaagtagaaggaatagatctc
tttgaagaagatcctaatcctttgaaaaataaatcaaaatctccaattgctcatggagcc
aaatatatgacttctactgaagtccgtaaccatcttcgccgtctttttgtaaaagaaaat
gttgtcctttctcgtctttatgctcataaacgcggaaaacctgcctctgctgatatgttt
ttcctccaaaatattgctgttcctcctactcgcttccgtccagcttccaaaatgggcgat
gaagtacatgaaaatatccaaaatgaacttctgaccagaattttacaatcctcaatacaa
attgcttctctctctaaagactctacagttgaagtaaatcctgatgagaaagaaggcttg
gagcgtcgttctcgtgcttttgaactgttgattaacgcttttgttcaactacaacacgat
gtaaacagcctgattgatagtaataggaatcctagttctggaggacagagtagaacagta
cccccgggtattaagcaaattttggaaaagaaggagggtcttttccgtaagcatatgatg
ggtaaacgtgtgaattatgcagctagatctgtcatttcacctgacccgaacattgaaact
aatgaaatcggtgttccgccagtctttgctactaaactcacatacccagaaccagtaact
ctttacaactttaacgagatgagaaatgcggttattaatggtccccataaatggcctggt
gctagtcatattcaaaacgaagacggcactttaatttctttaatgcctttaacaattgaa
caacgcactgctttagccaaccagcttcttacacctcaaagcaatttaatatcttcccca
tattcttattctcgcttaataaatactaacaaaaaggtttatcgtcatgtcagaaatgga
gacatgttgatattgaaccgtcaacccacccttcataagccttcgatgatggctcataaa
gctcgtattcttccaggtgagaagacgattagaatgcattacgcaaattgcaactcttac
aatgctgatttcgatggcgacgaaatgaacatgcattttccacaaagtaccaatgcgcgt
tctgaggctcaatttattgcaaacacagactctcaatatttggtgcctacctctggtgat
cctttgcgcggtcttattcaagaccatgtcgtaatgggtgtttggcttacctgtaaagat
acattttatactcgagatgaatatcagcaacttctatttcaggctttaaagcctgatgaa
accggtatgtatgggcgtatcaaaactcttcctcctgccatacaacgtccgggtatatac
tggacaggtaaacaaataatatcttctgttttgctcaacctaaaacccagtgatcgtcct
ggtcttaatcttaaaagcaaagcaaaggttccaggaaaatactggtcacctgactcagag
gagggatcagtattatttgatgatggtgaacttttatgcggtattcttgataagtcctct
tttggtgcctcggcttttggcttagttcactcagttcatgaattgtacggtcctgacatc
gctggtcgcttgctttctgttttaagtcgtctattcactgcgtatgctcaaatgcggggc
tttacttgccgtatggatgatttgagacttgatgagcaaggtgataattggagaagacaa
ctattggaaaacggaaaatcctttggacttgaagctgccagtgaatatgttggcctttca
acagattcgccaattgcgcttttgaacgctaaccttgaggaagtttacagagatgatgag
aagttacaaggtttagatgctgctatgaaaggtaaaatgaacgggcttacttcctcaatt
atcaacaaatgtatccctgatggtttacttacaaaattcccctataatcatatgcaaact
atgaccgtttctggtgccaagggtagcaacgtaaacgtctcacagatttcttgtcttttg
ggtcaacaggaattagaaggacgtcgtgttcctcttatggtgagcggaaagtcacttcct
tcctttgttccatatgaaacttctgctaagtctggtggttttattgccagcagattttta
actggtatcgcccctcaggagtattattttcactgtatggctggccgtgaaggcttgatt
gataccgctgttaaaaccagtcggtctggttatcttcagcgttgtctgatgaagcatctg
gaaggtttatgtgtacaatatgatcatactgttcgcgattccgatggatctatcgtccaa
ttccattacggagaagattctttagatgtcacaaaacagaagcacttgacacaatttgag
ttttcagccaaaaattataaatccttaattcagaaatacaaggtcaaatctgtcttatcg
gcggttgattccgaaactgcatcctcttacgcgaagaaagcgttgaaaaagccgtacaaa
tatgatccagtattggacaagtatccccctagtcgatatttgggaagcgtaagcgagaag
tttcaacgtgctgttgatgaatatacccagaaaaatccggacaagttgattgcttcgaag
aaagagagcaagcttgatgattctcttcttaatgaatcaaagttcaaggcattgatgcag
ttacgttaccaacagtctctggttgatcctggtgaaagtgttggtgtattagctagtcaa
tcaatcggtgagccatctactcaaatgactttgaacacattccattttgctggattcggt
gctaagaatgtcacattaggtattcctcgtttacgtgagattatcatgaccgctagtgca
aatattcaaactcctacgatgactcttcgtttgaatgacggcgtttccgataaaagagct
tcagctttttgtaaagaagtaaataaattggttttatctgaagttgttcgacaagtccga
gtaactgaaaaaatttctggtcaaggctctgacgaacaatctaaaacttatgctattcga
cttgatttatattctcgtgatgaatatcaggatgaatatggtgttcttcaggaagagatt
gagtcgacctttagtaatagattcttaaaaattcttaaccgaattattaaaagctatttg
gctaaatctaagcagcggaagtcaggaggtaaagatgatacagtacctgaggttggtcag
gcattaaagccacttgaagatatcgatgaagcacccattgaaggtcgtgctcaagaagct
ctcgaagatgaagacaatgatgctaccaatgagaaaatggtctctaggtcgaaacagcat
gcttcttatgaggggcctgatgaggcagacaaagtcgcccttcgtcagctaaaaggatca
aataaagttgaagacgtaaacatggatgaagaggaagatgagggtttcaagtccgatgaa
agtgtctctgattttaaagaaaggaaattgttggaaaagcagaacacagtttccatttcg
gaaaggcgggaacttcagttaaagacagcaaaagaaatactcagcaattgcaaacacctc
gactttgattacgttaacggtgagtgggcaactgttgaattggtgttcccaatcaatact
gaaaagctattaatggtgtcacttgtggaaaaggcatgttccgaaactgtcatacacgaa
attccgggcattacacgctgtttttccaaacctccagactctgccttagacactgttccg
aaggttatcactgaaggtgtcaatctgaaagcaatttgggaattttacaatgaaatctcc
atgaatgatatttacacaaatgatattgcagcgatccttaggatatacggtgttgaagca
gctcgtaatgcgattgttcatgaggtttcctccgtttttggagtgtatggtattgctgtt
gatcctcgtcatctttccttaattgcagattatatgactttcgagggaggatacaaagcc
ttcaatagaatgggaatagaatataacacttctccatttgcgaaaatgtcttttgagacc
acttgtcactttttgactgaggccgccctccgtggtgatgttgatgacttatccaatcct
tcatctcggttagtcgttggtcgagtcggtaactttggcaccggttcttttgacatattc
acccctgtagtcgattctcctgcaaactaa
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integrated database retrieval system