Shewanella psychrophila: Sps_00056
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Entry
Sps_00056 CDS
T05063
Name
(GenBank) fatty oxidation complex, alpha subunit FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw00071
Fatty acid degradation
spsw00280
Valine, leucine and isoleucine degradation
spsw00310
Lysine degradation
spsw00362
Benzoate degradation
spsw00380
Tryptophan metabolism
spsw00410
beta-Alanine metabolism
spsw00640
Propanoate metabolism
spsw00650
Butanoate metabolism
spsw00907
Pinene, camphor and geraniol degradation
spsw00930
Caprolactam degradation
spsw01100
Metabolic pathways
spsw01110
Biosynthesis of secondary metabolites
spsw01120
Microbial metabolism in diverse environments
spsw01200
Carbon metabolism
spsw01212
Fatty acid metabolism
Module
spsw_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
Sps_00056
00650 Butanoate metabolism
Sps_00056
09103 Lipid metabolism
00071 Fatty acid degradation
Sps_00056
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
Sps_00056
00310 Lysine degradation
Sps_00056
00380 Tryptophan metabolism
Sps_00056
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
Sps_00056
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
Sps_00056
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
Sps_00056
00930 Caprolactam degradation
Sps_00056
Enzymes [BR:
spsw01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
Sps_00056
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
Sps_00056
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
Sps_00056
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
Sps_00056
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Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AQS35281
UniProt:
A0A1S6HIC9
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All DBs
Position
complement(61673..63826)
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AA seq
717 aa
AA seq
DB search
MIYQSPTIQVELLEDNIARLCFNAPGSVNKLDRETIDSLNAALDAIKQNSDIQALVLTSG
KGAFIVGADITEFLGLFAQDDSVLLPWIAEANVVFNKLEDLPFPTISAINGFALGGGFET
VLATDFRIADSTARVGLPESKLGLVPGFGGTVRLPRLIGTDNALEWITSGKDQRPEAALK
VGAIDAIVAPENLQASAIQMLKDAVTEKLDWQTRRARKQAPLTLPKLEAMMSFATAKGMV
FKIAGKHYPAPMTAISVIEQAANLKRDEALKIEHQAFVKLAKTDVAQALIGIFLNDQLVK
GKAKKAGKLAKKVDTAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALDLGLGEASKLL
AAQIKRGRSTPEKMAKVLNNITATLDYTPVKDVDVVVEAVVEHPKVKSMVLAEVEQNVAD
DAIITSNTSTISINLLAKALKKPERFCGMHFFNPVHKMPLVEVIRGENSSEETIATVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLADGADFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMAKEGKDAIDIMFDADRFGQKNSKGFYAYSVDRRGKP
KKDVDAVSYELLGTEFGELKQFESDEIIARTMIPMIIETVRCLEEGIIASPAEADMGLVY
GIGFPPFRGGVFRYIDTMGVANFVALADKYAHLGGLYQVTDAMRELAANNGSYYQSK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaagtcctacgattcaggttgagttacttgaagataatatcgctcggcta
tgctttaacgcaccgggttcagtcaacaagttagatagagaaacgattgactctcttaac
gctgcactcgatgcaatcaagcaaaattcagacatccaagctttagtcctgacttcaggt
aaaggcgcctttattgttggcgccgacatcactgaattcttaggcttgttcgcacaggat
gatagcgtgctactcccttggatagcagaagcgaatgtcgtatttaataagttagaagat
cttccctttccaactatctcagccatcaatggctttgcactaggtggcggtttcgaaacc
gtactagcgaccgatttccgcattgccgattccacggcaagagttggactacctgagtct
aagctgggacttgttcctggttttggtggtacggttcgccttccacgcctaattggtaca
gataacgcgctcgagtggatcactagcggtaaagaccaacgtcctgaagcggcactaaaa
gtcggcgcaatcgacgctattgttgcaccagagaacttacaagcttcagcaattcagatg
ctgaaggatgccgtcacagaaaaactcgactggcagactcgccgtgctcgcaagcaggca
ccacttacactacctaagctagaagctatgatgtcattcgccacagcgaaaggcatggta
ttcaagatagcgggcaagcattaccctgcacctatgacagccatcagcgttatagagcaa
gctgcaaaccttaaacgagatgaagcccttaagatagagcatcaggcctttgttaagtta
gccaagacagatgtggcccaggcattgataggtatcttcctcaatgaccagttagtaaaa
ggcaaggctaagaaagccggaaaactggctaagaaagtcgacacagctgccgtattgggc
gcaggcatcatgggtggcggtatcgcctaccagagcgccagcaagggcacgcctatcgtc
atgaaggatattgcacagccagctctggatttaggtctaggggaagcgtctaagcttctt
gctgcacagattaaacgtggtcgctccacaccagagaagatggctaaggtgcttaacaac
atcacagcaactctggactacaccccggttaaagatgtcgacgtagtcgtcgaagcggtt
gtcgaacatcctaaggtcaagtctatggtattggccgaagttgagcagaatgttgccgac
gacgccatcatcacctctaatacatctaccatctcgatcaatttgctggctaaggcgctt
aaaaagcctgagcgcttctgtggcatgcacttcttcaacccggtacataagatgccactg
gttgaagtgattcgtggtgagaatagttctgaagagactatcgcaacagttgttgcctac
gccagtaagatgggtaaaacacctatcgtagtgaatgattgccctggcttcttcgtcaac
cgcgtgctgttcccttactttgcaggcttcagcggcctactcgccgacggtgctgatttc
gccgctatcgataaagtgatggagaaacagttcggttggcctatgggcccagcatactta
ctcgatgttgtcggtttagatacaggtcatcacgcccaggctgttatggctgaaggcttc
cctgatcgcatggcgaaagaaggcaaagatgctatcgatatcatgttcgatgctgatcgc
ttcggtcagaagaatagcaaaggtttttatgcttactcagtcgaccgtcgtggcaagcca
aagaaagatgtcgatgccgttagctatgaattgctaggtaccgaattcggtgagcttaag
caattcgagtccgatgaaatcatcgcccgtactatgatccctatgatcatagaaaccgta
cgctgtctcgaagaaggtattattgcttcacccgctgaagctgatatgggtctagtttac
ggtataggtttcccaccattccgaggcggtgtattccgctacatagataccatgggcgta
gcaaactttgttgctctcgccgataaatacgctcacttaggtggcctatatcaagtaaca
gatgccatgcgtgaacttgccgcaaataatggcagctactaccagtctaaataa
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