Strongylocentrotus purpuratus (purple sea urchin): 115928631
Help
Entry
115928631 CDS
T01019
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115928631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spu03021
]
115928631
Enzymes [BR:
spu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115928631
Transcription machinery [BR:
spu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115928631
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
115928631
NCBI-ProteinID:
XP_030852023
LinkDB
All DBs
Position
Unknown
AA seq
1644 aa
AA seq
DB search
MGHVTLPLPVFNPLFFPLVRQLLHGSCLECNHLLAPRWTLRLVVQQLRCLDHGLLGSVGD
LAELASTVISESDDGEGLADQMETTLKEYVDEILSKHVKEQPSEARHIEECRRHVIQSFI
RQHVASRGRKCPLCKKPVREIRPHHNSVILTKVISASGQGLQMVYLSPHEARKHLRNLMA
NDGVGLRHIFGVLDLPSKRGEDSTIDQFFLEALPVIPSKFRPISTAGEKTFENPQTGNLS
KVLKDCHVLHLLLRVMRQSTSQQGSQDVENGVMEIDVKLTVKDKENVDQSILSTIPGKTL
PEKLQNALTQLQTHVNCVIDSDLDKISTDKAPGIKQLLERKEGLFRKHMMGKRVNYAARS
VISPDPYINTDEIGIPQVIAKRLTYPQPVTDWNAQELRQMVMNGPDVHPGALLIENEDGS
QVRLRADNQSQRESVAKRLLTPSNINKQNTGSKKVHRHLQTGDIVLLNRQPTLHKPGIMA
HKVRVLPGEKTLRLHYSACKTYNADFDGDEMNVHFPQNELGRAEALTIASTNHQYLVPKD
GTPLGGLIQDHIISGVRMTVRGRFFTRLEYQQLVYCSLTDKEGPVKCLPPCIRKPALLWS
GKQLISTIIINTIPEGCKPLDFIGKSKINNKSWCKAEPRPPKAGGGALVGTDMCESEVII
REGELLSGVLDKGNYGPTPYGLVHCIYELYGGHIAGKLLSHFGRLFTTFLQQHTGFTLGP
EDIIVLDKADEKRLDILEESKDCGSEAVAQALGVEEKPDGSDMKEIDLQMKTKTDLYSNQ
VSSTCLGSGLLKQFPENNLQLVVLSGAKGSMVNCLQISCLLGQIELEGRRPPLMVSGRSL
PSFPPYETSPRSGGYVAGRFLTGIKPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKH
LEGLVVNYDQTVRDSDGSIVQFQYGEDGLDILRTPFLHKEQFQFLIENANAHLPSQSKYR
GPVNDPSQAEKLFRKIKRWKEKHSDSSRSERRSPFLEFCHKEYPSILENAQSDEDNVRKA
YNKAKKRIIRRWREVTDRHRYEKKTAPCPDPVSCQMRPDRHLGAISEKLESLLQDYLDSR
LPTSDDADGTKREDEETKLKNMMYSKYQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHF
AGRGDMNVTLGIPRLREILMVASANIKTPSMTIPFLNPDISAKKIGRICRQLSRVHLSQV
IEDIDIWESYDFPTTHDHYRVYKIRLNFLPHEEYKDELNATPASILSYIEVTFLKQFLEI
VKRKMKDLKKANFASSRKSKLDVIGDGGNAAPTQDKNGTDPAMQEDEPASVSRNRDSISS
EGSGDEEGDGTASKYKKKHDEEKEYEDDGGEEAEEEMEGEWEEIIDTGGDGENGKADSPG
TPDEDDGGDADDEAMEEDLLSSQLDESQSSSRKKKKRQVAISDKEKDQRILATVNLSPLM
VMYDFDAEDQLWCEFKFKVDLTDNKLDMASLVELVSKQATVHHVPGISRCLVSGQGSGET
KLLTEGVNLHELYKHDKLLDLNKAYTNDIHSMANAYGIEAASKAIIKEVRDVFSVYGITV
DPRHLSLVSDYMTFEGVYRPFNRIGLESNASPIQKMTFESCMRFLREATIQGAKDNLQSP
SARLVVGRVVNGGTGCFDLIQPLK
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatgtgaccttgccacttcctgtcttcaatccacttttcttcccgcttgtccgc
cagctcctacatggtagctgtttagagtgtaaccacctcctagcccccagatggaccctg
cgtctggtggtacagcagctgcgatgcttggatcatggtctacttggtagcgtaggagac
cttgctgagcttgctagtacggtcatatcagagtcagatgatggggaaggtctggcggat
cagatggagaccactctcaaggaatatgtggatgaaatattgtctaagcatgtgaaagag
cagccttccgaggcacgtcatattgaggagtgtaggcgtcatgtgatccaatcctttata
cgtcagcacgtagcatcaagaggtaggaagtgtcctctatgtaagaagcctgtacgtgag
atccgtcctcatcataacagtgtgatcctcaccaaggtgatcagtgcgtccggtcagggc
ctgcagatggtctatctttctccacatgaggctaggaaacatctcaggaacctgatggca
aatgatggtgtaggtctacgtcatatatttggagtgcttgatctacccagtaagcggggt
gaagactcaaccatagatcaattcttcttagaagcgctaccagtcatcccttccaaattc
agaccaatatccacagcaggagaaaagacctttgagaatccacagactggtaacctatct
aaggtactaaaagattgccatgtattgcatctcctattacgagttatgaggcaatctacc
agtcaacaagggtcccaagatgtagagaatggtgtcatggagattgatgttaaactgaca
gttaaagataaggagaatgttgatcagagcatattaagtaccatcccgggaaagacctta
ccagagaagcttcagaatgctctaacccagctacaaactcatgttaactgtgtcattgac
agtgaccttgacaagatatctactgacaaagcaccaggcatcaaacagcttcttgagagg
aaagagggtctgttccgcaagcacatgatgggcaaacgtgtgaactacgcggctcgttca
gtcatctctcccgatccgtacatcaacaccgatgagataggtatcccacaagtcattgcc
aagcgtctcacatacccccaacctgtgactgattggaatgcacaggagctgagacagatg
gtcatgaatggacctgatgtacatccaggtgctttactgatagagaacgaggatggttct
caggtcagactacgagcggacaaccaatcacagagagaatccgttgctaagagattgctt
acacctagcaacattaataaacagaacactggatcaaagaaggttcatagacatctacag
actggtgatatagtcttgctgaatcgtcaaccaacgcttcataaaccaggcatcatggcc
cataaggtcagagttctacccggtgagaagacactacgcttacactactcagcatgtaag
acatacaacgctgactttgatggagatgagatgaacgtgcatttcccccagaatgaactg
ggtcgagcagaggcactcactatagctagtaccaatcatcagtacctggttcctaaggat
ggtacccctctgggtggtctcatccaggatcacattatatcaggggtgaggatgacagtc
agaggaaggttcttcacaaggcttgaataccaacagcttgtctactgttcactgactgac
aaagagggcccggtcaaatgtctccctccgtgtatcaggaagcctgccctcttgtggtcc
gggaagcagctgatttcgactatcatcatcaataccatacccgagggatgtaagccgctt
gacttcattggaaagtcaaagatcaataataagtcctggtgtaaagcagagcctaggcca
cctaaagcaggtggtggcgccctcgttggtacggacatgtgtgagtctgaggtgatcata
agagaaggagagctgctgagtggtgtgttagacaagggcaactatggacctacaccctat
ggattagtgcactgtatttatgagctatatggtggtcatatagctggtaaactgctgagc
cactttggacgtctcttcacgaccttcctgcagcagcacactggcttcacgctaggacca
gaggacatcattgtcttagacaaggctgatgagaagcgtctagatatcttggaggagtct
aaggactgtggatcagaggctgttgctcaggcgttgggtgtagaggaaaagcctgatggg
agtgatatgaaggagattgatctacagatgaagactaagacggatctttatagtaaccaa
gttagctctacctgtctgggctctggactacttaaacagttccctgagaacaacctacag
ctagttgtcttatctggtgctaagggatctatggtgaactgtcttcagatctcctgtctg
cttggtcagatagagttggaaggacgtcgtccacccctgatggtcagcggtcggtcactc
ccgtccttcccaccctatgagactagtcctaggtctgggggatacgtggctggtaggttc
ctgactggaatcaaacctcaggaatacttctttcattgtatggctggtagagaaggtctg
gtggacacagcagtgaagacaagtcgcagtggttacctccagagatgtatcatcaaacat
ctagagggattggtagtcaactatgatcaaacagttagggatagtgatggcagtatagtc
cagttccagtatggtgaagatggtctagatatcctcaggactccgttcctacacaaagaa
cagttccaattcctgatagagaacgccaatgctcatctgccatcacagtccaagtatcgt
ggaccggtcaatgaccccagtcaggcagagaaactattcaggaagatcaagagatggaaa
gagaaacattctgatagctccagatcagaacgaaggtctccattcctagagttctgtcat
aaagagtatccatccatcttagagaatgctcaatctgatgaagataacgtaaggaaggct
tataacaaggcaaagaagaggatcattaggagatggagagaagtcacagataggcatagg
tatgagaagaagacggctccctgtccagaccctgtcagctgccagatgagacctgataga
catcttggagctatctcagagaaactagaatctctcctacaagactatctagactcaaga
ttaccaacatcagatgatgcagatgggactaagagagaagatgaagagactaaactgaag
aatatgatgtatagcaagtatcagagagctttgtgtgatccgggagaagctgtaggtctt
cttgcagctcagtcgattggagagccttcaactcagatgacattgaatacgtttcatttt
gctggtcgtggtgacatgaacgtaacactgggtatcccaagactcagggagattctgatg
gtagccagtgccaatataaagacccctagtatgacgataccattcctcaatcctgatatc
tcggctaagaagattggcaggatatgcaggcagctcagtagagtccacctgtcacaggta
attgaagatatagatatctgggaatcctatgactttcctacgacacatgatcactatcgt
gtatacaagatcagactcaacttcttgcctcatgaagaatacaaggatgagctgaatgcc
actccagctagtatcctgtcttacattgaagtgactttcctcaagcagttcttagagatt
gtcaagagaaagatgaaagatctcaagaaagcaaactttgcatcatccagaaaatccaag
ttggacgtgattggtgatggtggcaatgctgcccctacccaagataaaaatggaacagac
ccagccatgcaagaagatgaaccagcctctgtgtcaaggaacagagattccatttcatca
gaggggagtggtgatgaggagggtgatggtacagcatctaaatacaagaagaaacatgat
gaagagaaggagtatgaggatgatggaggagaggaagcagaggaggagatggaaggagaa
tgggaagaaatcattgatacaggtggtgatggagaaaatggaaaagcagatagccctggt
actcctgatgaagatgatggtggtgatgctgatgatgaagcgatggaagaagatctactc
tcatcccagctggacgagagtcaatcatcatctaggaagaagaagaagagacaggtggcc
atcagtgataaggagaaagatcagagaatactggccacagtgaacctgagtccattgatg
gtgatgtatgactttgatgctgaagatcagctatggtgtgagttcaaattcaaggtggat
ttgactgataataagctggacatggcttcactggtagagctagtctctaaacaagccacc
gttcatcatgtacctggaatctctcgctgtcttgtgtcgggtcaggggtctggtgagact
aaactactcactgaaggagtcaatctacatgagctgtacaagcatgacaagctactagac
ctgaacaaggcatacaccaatgatattcattccatggccaatgcatatggtatagaggca
gcatccaaagctatcatcaaggaggtacgtgatgtattctctgtgtacggcatcacggta
gaccctcgtcatctctcattggtttccgactatatgacctttgagggtgtgtatcgacct
ttcaaccggatcggtctggagtccaatgcctctccgatacagaagatgacgtttgagagc
tgcatgaggttccttagggaagctactatacaaggtgctaaagataacctgcagtctccc
tctgcacggcttgtagtaggcagagtagtcaatggtggaacaggatgctttgatctcata
caacctctcaagtag
DBGET
integrated database retrieval system
