Strongylocentrotus purpuratus (purple sea urchin): 763581
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Entry
763581 CDS
T01019
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
763581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
763581
Enzymes [BR:
spu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
763581
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
763581
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
ATP_bind_1
AAA_16
AAA_24
CbiA
AAA_22
Motif
Other DBs
NCBI-GeneID:
763581
NCBI-ProteinID:
XP_030845869
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
MESPEEIAVENAKDCSNWEELKAQTNLGAEGGKEYNLSQDNELRFEVENNEIVQMEIKEG
LAEVFGSELMKNRIYKFASGSKIAVFTWQGCKILLRGKTEVAYVSKETPMMVYLNTHAAL
EQMRQQAELEATRGPKVMVVGPGDVGKSTVCRLLLNYAVRVGRRPTFIELDVGQGSVSVP
GTVGALLVERPADVEQGFALTAPLVYHFGATSPGANMKLYEILTAKLAEVFAMRCKTYSR
IAQSGCVINTCGWIKGEGYQSLKYAAQAFEVDVIIVLDQERLYNELVRDMPSFVKIVLQS
KSGGVVERSQGFRRFTRDEKVREYFYGFNCCYYPHSFEVKFVDVEIYKVGAPPVPNSCLP
LGMTPEDNQTKLVPVNPGPEIVHHLLSVSLADTKEDDLLSTNVAGFIVITNVDMERKTFT
VLSPAPRPLPRRYLLLSDVRFMDIK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggaatctcctgaggaaatagctgttgaaaatgcaaaagattgttccaattgggaagag
ttaaaggctcaaactaatctaggagctgagggaggcaaggagtacaacctttctcaagac
aacgagctcagatttgaagtagaaaacaatgaaattgtgcaaatggagatcaaagaaggt
cttgcagaagtgtttggctcggagctgatgaagaatagaatttataagtttgcatccggt
tctaaaatagcagtattcacatggcagggatgcaagattctactccgagggaagacagag
gtagcgtacgtttccaaagagacacccatgatggtgtatctcaacacacatgcagctcta
gaacaaatgagacaacaggctgaactggaggctactagaggacctaaggtgatggttgta
ggacctggagacgtggggaagagcacagtatgcagattattgttaaactatgcagtcagg
gtcggtaggagacctactttcattgaattagatgtcggtcagggttctgtgtctgtgcct
ggtactgtaggagcattgctggtagagagaccggccgatgtagaacaaggctttgccctc
actgctccgttagtctatcactttggggctacctcacccggcgctaatatgaagctctat
gagatcctcacagccaagctcgcagaggtctttgcaatgcgatgcaaaacatattcaaga
attgctcagagtgggtgtgtcatcaatacatgtggttggatcaaaggtgaaggctaccag
tctctcaaatatgcagctcaggcctttgaagttgatgtgatcatcgtgctagaccaggag
aggttatacaatgagttggtccgagacatgccttcattcgtaaaaatcgttctacaatcc
aaatctggtggggtggtagagagatctcagggtttcaggcgatttacaagagatgagaaa
gttcgagagtacttctacggctttaactgctgttactatcctcactccttcgaggtcaaa
tttgttgatgtagaaatctacaaggtcggagctcctcctgtacctaactcttgcctacct
ctcgggatgactcctgaagacaaccaaactaaactagttccagtcaatccaggtccagaa
attgttcatcatctacttagtgtaagtctagctgataccaaagaggacgaccttctatct
accaatgtagctggtttcattgttatcaccaatgtggacatggagaggaaaacattcaca
gtgctttcacctgctccgagaccattaccacggcgataccttctccttagtgacgtacga
ttcatggacatcaaatga
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