Salpingoeca rosetta: PTSG_07432 Help Entry PTSG_07432        CDS       T04136                                  Name (RefSeq) polymerase II polypeptide A   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism sre  Salpingoeca rosetta Pathway sre03020   RNA polymerase sre03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:sre00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     PTSG_07432   09124 Replication and repair    03420 Nucleotide excision repair     PTSG_07432  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:sre03021]     PTSG_07432    03400 DNA repair and recombination proteins [BR:sre03400]     PTSG_07432 Enzymes [BR:sre01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      PTSG_07432 Transcription machinery [BR:sre03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      PTSG_07432 DNA repair and recombination proteins [BR:sre03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       PTSG_07432 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R RNA_pol_Rpb1_4 DUF3137 Motif Other DBs NCBI-GeneID:  16071496 NCBI-ProteinID:  XP_004990933 UniProt:  F2UIP5 LinkDB All DBs Position Unknown AA seq 1834 aa AA seqDB search MVTFAERPSVAPLRKAKRIKFGILSPDEIKAGSVCEITTPEHQENGVPKPGGLSDPRMGP IDRDLRCETCHGTASECPGHFGHIDLAKPVVHVGMISKIVQVLRCICKSCSKLLVDLSDD EVKEILRRTKNDPKKRLKAIAKKCAGRKVCEAGTGMDDDRPDDIQLSPEEELEKQGHSGC GAEQPKSVRRSTEPGHTLEIIMETKDDNGLVTARTMSTEEIYELLHNISHADAEALGFDP HHTRPDWLMITCLPVPPLAVRPSVQMGSGGRSHDDLTNQYAEIVKANNGLRENEQSGAPR HVIEENVLYLQFKVATLFDNNLPHMPMSMQKSGRPIKAISQRLKGKEGRIRGNLMGKRVD FSARTVINPDPNLEIDQVGVPTSVALTLTVPERVTNFNINTMKQYVDRGPNQHPGAKYII RDDGQRIDLRHARNAMDLNLQPGYIVERHLKDDDVIIFNRQPTLHKMSMMGHRVKVLPWS TFRMNLSVTSPYNADFDGDEMNLHVPQSLGTRAEVEEIMMVQRNILTPQANRPVMGIIQD TLTAIRKLTFRDTFIEKDDMMQLLMWYPNWDGRLPEPALLKPKELWTGKQLVSMVLPDKI NLVQFYSQHDGSVDTPRDKDGNVIEAEDATHITQHDTRVLIQNGKLISGILCKKTMGARA NGVIHVIMMEHGHERARQFYGNVQTVVNNWLLIHGHSIGIGDAIADTHTYDTIDSEKAAA NEKVNELIQDAQLDKIEPSPGHTIRQTFEAKVNKNLNQVIKKTGGAVQKALSEHNNFKAM STAGSKGSEINISQIIACVSQQNVEGKRIPFGFRHRSLPHFVKDDYGPHACGFVFSSYIQ GLEPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKSMEGLRLEYDGTVRNSTGDLVQL HYGEDGMDGALVESQSLTLKLDNATFEKRFLTNVANTRSLRRFLTEDVVDDLAASQDAAQ QLLDEYEQLIRDRDELRKVHDRGNETVVLPVNLHRLLWNAQKLFHIDGTQPSDLNPLYAL TSINALTKKLIVVPGDDPISVAAQESTTLQFCCHLRSMLATNRLIHEHRLTREAFEWVLG EIEHRFAQSQAQPAEMVGPLAAQCLGEPTTQMTLNTFHQAGYSAKNVTLGVPRLKEIINV SRNPKTPSMLLFLDEQASDNETLALRCLYDLEYTPLSAVVKKSSICFDPDERNTIIQEDL EFLQDYFDDPDYHPEDLSPWVLRLELDSVQMTLRDVSCDMIEEKIESYLESTVKCVYTTN AAAKQKVMRIRLTKVEENEEGMEDFMSADRLLRLVEERLLKNLHLKGVEEISRGYISKPE TKEPEKLKRYYDENGTFQSKSGWIIETDGSSLAKVLSHPHVDPENSSTNDIVEVFQVFGI EAARKAVENEIINVVTSGGANVNYRHLSLLCDIMTNKGSLMAITRHGINRQSTGALMRAS FEETVDILLEAAAHAETDTMRGVSENIMLGNLAPVGTGYFDLFIDRDMLSQAITFRPTDL VGDDDILGAEEGDDLGEGAATPWTSARTPAHFAASPSIVGGQTPIMGQFTPDHAFDGTLS PGRSPVADSPGFGAMSPSYNPASPRYAPQSPGYSPTSPRADAAASPMYSPTSPGYSPTSP KPGQSPTSPSYSPTSPGYSPTSPSFSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS PTSPSYSPTSPSYSPTSPSYSPTAPGGSNNNPSR NT seq 5505 nt NT seq  +upstreamnt  +downstreamnt atggtgacgtttgcggagcgcccatctgtggcgccgctgcgcaaggccaagcgcatcaag tttggcattctcagccccgacgagatcaaggccggttccgtgtgcgagatcaccacgcca gagcaccaggagaatggcgtaccaaagcctggtggcctgagtgaccctcgcatgggcccc attgatcgcgaccttcgctgtgagacgtgccatggcaccgcctcggaatgcccgggacac tttggccacatcgacctggccaagcccgtcgtccacgttggcatgatcagcaagattgtg caggttcttcgctgcatctgcaagtcgtgctcaaagctgctggttgacctgtcggatgat gaggtgaaggagattctgcgccgcacgaagaacgaccccaagaagcggctcaaggccatt gccaagaagtgtgctggccgcaaggtgtgcgaggccggaacagggatggacgacgacagg ccagacgacatccagctcagcccagaggaggagcttgagaagcagggccactcggggtgc ggtgccgagcagccaaagtccgtgcgtcgctctactgagcccgggcatacgctcgaaatc atcatggagacaaaggacgacaacggtcttgtcacagcgcgcaccatgtcgacggaagaa atttacgagcttctgcacaacatcagccacgccgatgccgaggcgctgggctttgacccc catcacacgcgcccggactggcttatgatcacctgcctgcccgtgcccccgctcgccgtg cgcccttccgtgcagatgggcagcggtggccgcagccacgatgacctcaccaaccagtac gcagagattgtcaaggcaaacaacggcctgcgcgagaacgagcagagcggtgcgccacgg cacgtgattgaggagaacgtgctctacctccagttcaaggtggccaccctcttcgacaac aacctcccacacatgcccatgtccatgcagaaatctgggcgccccatcaaggccatctcg cagcgcctcaagggcaaagagggccgaatccgcgggaacctcatgggaaagcgcgtcgac tttagcgcacgtaccgtcatcaacccagacccaaacctcgagattgaccaggttggcgtg ccgacatccgtggcgctgacgctgacagtgccggagcgggtgaccaacttcaacatcaac accatgaagcagtatgttgaccgcggcccaaaccagcatccgggcgccaagtacatcatc cgcgatgacgggcagcgcatcgatctgcggcacgcgcgcaacgccatggatctcaacctc cagcccgggtacattgttgagcggcatctcaaggacgacgatgtcatcatcttcaaccga cagccaaccctgcacaagatgtccatgatgggccatcgcgtcaaggttctgccgtggtca accttccgcatgaacctcagtgtcacctccccgtacaacgccgatttcgatggcgatgaa atgaacttgcacgtgccacaatccctcggcacccgcgcggaggtcgaggagattatgatg gtgcagcggaacattttgacgccgcaggccaaccggcctgtgatgggtatcatccaggat acgctgacggccatccgcaagctcacgttccgcgacacattcatcgagaaggacgacatg atgcagctgctcatgtggtaccccaactgggacggccgcctgccggagcctgcgctgctc aagccaaaggagttgtggaccggcaagcagctcgtgtccatggtgctgccggacaagatc aacctggtgcagttttacagccagcacgacggctccgtcgacacgccgcgggacaaggac ggcaacgtgattgaggcggaggacgccacccacatcacccagcacgacacgcgcgtgctg atccagaacggcaagctcatctccggcatcctgtgcaagaagacgatgggcgcgcgcgcc aacggcgtcatccacgtcatcatgatggagcacggccacgagcgcgcccgccagttttac ggcaacgtgcagacggtggtcaacaactggctcctcatccacggccacagcatcggcatc ggcgacgccattgccgacacgcacacctacgacacaattgacagcgagaaggcggcggcc aacgagaaggtgaacgagctcatccaggacgcgcagctggacaagattgagccgtcgccc ggccacaccatccgccagacgtttgaggccaaggtgaacaagaaccttaaccaggtcatc aagaagacgggtggcgccgtgcagaaggcgctctccgagcacaacaacttcaaggccatg tccaccgccgggtccaagggcagcgagatcaacatctcccagatcatcgcctgcgtctcg cagcagaacgtggagggcaagcgcatcccctttggctttcggcaccgcagcctgccgcac tttgtcaaggacgactacggcccgcacgcgtgcgggtttgtcttcagctcctacatccaa gggctcgagccgcacgagtttttctttcacgccatgggcgggcgcgagggtctgattgac acggccgtgaagacggccgagaccgggtacatccagcggcggctggtcaagtccatggag ggcctgcgcctggagtacgacggcaccgtgcgcaactccacgggcgacctggtgcagctg cactacggcgaggacggcatggacggcgccctcgtcgagtcgcagtcactcaccctcaag ctcgacaacgccacgtttgagaaacgcttcctcaccaacgtcgccaacacccgctccctg cggcgcttcctgacggaggacgtggtggacgacctggccgcgtcgcaggacgccgcgcag cagctgctggacgagtacgagcagctcatccgcgaccgcgacgagctgcgcaaggtgcac gaccgcggcaacgagacggtcgtcctccccgtcaacctgcaccgcctgctgtggaacgcg cagaagctgttccacattgacggcacgcagccctcggacctcaacccgctgtacgcgctc acctccatcaacgcgctcacaaaaaagctgatcgtggtgccgggcgacgaccccatcagc gtcgccgcgcaggagtcgaccacgctgcagttttgctgccacttgcgctccatgctggcc acaaaccgcctcatccacgagcaccgcctcacgcgcgaggcgtttgagtgggtgctgggc gagattgagcacaggtttgcgcagtcgcaggcgcagcccgcggagatggtgggcccgctg gcggcccagtgcctcggcgagccaaccacgcagatgacgctcaacacgttccaccaggcc ggttactccgccaagaacgtcacgctcggcgtgccgcgcctcaaggagatcatcaacgtg tctcgcaaccccaagacgccaagcatgctgctgttcctggacgagcaggccagcgacaac gagacgctcgcgctgcgctgcctgtacgacctcgagtacaccccactcagtgccgtggtg aagaagagcagcatctgctttgacccggacgagcgcaacaccatcatccaagaggacctc gagtttctgcaggactactttgacgacccagactaccaccccgaggacctgtccccctgg gtgctgcggctggagcttgactcggtgcagatgaccctgcgcgacgtgtcctgcgacatg attgaggagaagattgagtcgtacctcgagtcgacggtcaagtgcgtgtacacgaccaac gccgctgccaagcagaaggtgatgcgcatccgcctgaccaaggtggaggagaacgaggag ggcatggaggacttcatgtccgcggaccgcctgctgcgcctggtggaggagcggctgctg aagaacctgcacctcaagggcgtggaggagatctcgcgcgggtacatctcaaagccggag accaaggagccggagaagctcaagcgctactatgacgagaacggcaccttccagagtaag tctggctggatcatcgagacggacggctccagcctggccaaggtgctctcgcacccgcac gtcgacccggaaaactcgtccaccaacgacattgtggaggtgttccaggtgtttggcatt gaggcggcgcgcaaggccgtggagaacgagattatcaacgtcgtgacgtctggcggcgcc aacgtcaactaccgccacctgtcgctgctgtgcgacattatgacgaacaagggcagcctg atggccatcacgcgccacggcatcaaccgccagagcaccggcgccctgatgcgagcctcc tttgaggagacggtcgacattctgcttgaggccgcggcccacgcagagacggacaccatg cgtggcgtctcggagaacatcatgctgggcaacctcgccccggtcggcacgggctacttt gacctgtttattgaccgcgacatgctgtcgcaggccatcacgttccgccccacggacctg gttggcgacgacgacattctcggtgcagaggaaggcgatgacctgggcgagggcgcggca acgccgtggaccagcgcccgcaccccagcccactttgccgcgtcgccctccatcgtcggc gggcagacccccatcatgggccagttcaccccggatcacgcctttgacggcacgctgtcg cccggccgcagccccgtggcggactcgccagggtttggcgccatgtcgccctcgtacaac ccggcgtcgccacgctacgccccgcagtcgcccgggtactccccgacgtctcccagggcc gacgctgcagcgtcgccaatgtacagcccaacgtcgcccgggtactccccgacgtcgccc aagccaggccagtcgccgacatcgccctcgtactcaccgacatcaccaggatactcgccc acctccccatctttctccccgacgtccccctcttactcgcccacgtcgccctcgtacagc ccaacctcgcccagctactcccccacatcgccgtcttactctcccacctccccgtcctac tctcccacctccccgtcctactccccgacgtcgccgtcctactcgccaacgtcgccgagc tactcacccacgtccccctcttactcgcccacgtcgccgtcgtacagcccaacctcgccc agctactcccccacatcgccgtcttactctcccacctccccgtcgtactccccaacctcc ccaagctacagccccacatcgccatcatacagccccacatcaccaagctactcgcctacg tctccttcatacagccccacatccccgagctattctcccacgtccccgtcatactcgccc acgtcgccgagctacagccccacgtccccatcctattcgcccacgtcgccctcgtacagc ccaacctcgcccagctactctcccacatcgccgtcttactcccccacctccccgtcctac tctcccacagctcctggtggcagcaacaacaaccccagccgttag

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